Strain identifier

BacDive ID: 245

Type strain: Yes

Species: Aeromonas schubertii

Strain Designation: 2446-81

Strain history: CIP <- 1990, ATCC <- F. Hickman-Brenner, CDC: strain 2446-81 <- Texas Hlth. Dept., Texas, USA

NCBI tax ID(s): 652 (species)

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General

@ref: 1863

BacDive-ID: 245

DSM-Number: 4882

keywords: genome sequence, 16S sequence, Bacteria

description: Aeromonas schubertii 2446-81 is a bacterium that was isolated from forehead abscess.

NCBI tax id

  • NCBI tax id: 652
  • Matching level: species

strain history

@refhistory
1863<- ATCC; CDC 2446-81
67770F. W. Hickman-Brenner CDC 2446-81.
122515CIP <- 1990, ATCC <- F. Hickman-Brenner, CDC: strain 2446-81 <- Texas Hlth. Dept., Texas, USA

doi: 10.13145/bacdive245.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas schubertii
  • full scientific name: Aeromonas schubertii Hickman-Brenner et al. 1989

@ref: 1863

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas schubertii

full scientific name: Aeromonas schubertii Hickman-Brenner et al. 1989

strain designation: 2446-81

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34262MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
1863COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yesName: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar basehttps://mediadive.dsmz.de/medium/693
1863TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yesName: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/92
122515CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
34262positivegrowth22
1863positivegrowth30
48965positivegrowth30
67770positivegrowth37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

fatty acid profile

  • @reffatty acidpercentageECL
    48965C11:00.411
    48965C12:0912
    48965C13:02.213
    48965C14:04.414
    48965C15:04.715
    48965C16:08.416
    48965C17:00.717
    48965C13:0 3OH/C15:1 i I/H1.214.469
    48965C13:0 iso2.412.612
    48965C13:0 ISO 2OH1.313.814
    48965C14:0 3OH/C16:1 ISO I6.215.485
    48965C15:0 3OH0.516.504
    48965C15:0 ISO2.114.621
    48965C15:0 ISO 3OH1.816.135
    48965C15:1 ISO F0.914.414
    48965C15:1 ω6c0.514.856
    48965C15:1 ω8c1.314.792
    48965C16:0 anteiso0.415.717
    48965C16:0 N alcohol1.715.549
    48965C16:1 ω7c29.615.819
    48965C16:1 ω7c alcohol2.615.386
    48965C17:0 10-methyl2.117.41
    48965C17:0 iso0.716.629
    48965C17:1 ω6c0.816.862
    48965C17:1 ω8c2.216.792
    48965C17:1 ω9c ISO2.516.416
    48965C18:1 ω7c /12t/9t5.817.824
    48965C18:2 ω6,9c/C18:0 ANTE2.417.724
    48965Unidentified0.413.934
    48965Unidentified0.817.321
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    48965C12:09.212
    48965C13:00.713
    48965C14:03.814
    48965C15:01.615
    48965C16:014.216
    48965C17:00.717
    48965C13:0 iso0.812.612
    48965C13:0 ISO 2OH1.113.814
    48965C14:0 3OH/C16:1 ISO I8.715.485
    48965C15:0 ISO0.614.621
    48965C15:0 ISO 3OH0.816.135
    48965C16:1 ω7c39.315.819
    48965C17:0 iso0.816.629
    48965C17:1 ω6c0.616.862
    48965C17:1 ω8c1.316.792
    48965C17:1 ω9c ISO1.716.416
    48965C18:1 ω7c /12t/9t12.417.824
    48965Unidentified0.912.274
    48965unknown 14.5030.814.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
1863++--+----+++--------+
1863+++-+----+++--------+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
1863forehead abscessTexasUSAUSANorth America
48965Human abscess,foreheadTexasUSAUSANorth America
67770Forehead abscess
122515Human, AbscessTexasUnited States of AmericaUSANorth America1981

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Other
  • Cat3: #Abscess

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
18632Risk group (German classification)
1225151Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218A.shubertii (ATCC 43700T) gene for 16S ribosomal RNAX746821460nuccore652
20218Aeromonas schubertii strain CECT 4240 16S ribosomal RNA gene, partial sequenceJX014452151nuccore652
1863Aeromonas schubertii 16S rRNA gene, strain ATCC 43700X604161503nuccore652

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas schubertii CECT 4240652.4wgspatric652
66792Aeromonas schubertii strain ATCC 43700652.6wgspatric652
66792Aeromonas schubertii CECT 42402639763128draftimg652
66792Aeromonas schubertii ATCC 437002700989550completeimg652
67770Aeromonas schubertii CECT 4240GCA_000820105scaffoldncbi652
67770Aeromonas schubertii ATCC 43700GCA_001481395scaffoldncbi652

External links

@ref: 1863

culture collection no.: DSM 4882, ATCC 43700, CDC 2446-81, CCUG 27820, JCM 7373, LMG 9074, CCM 4356, CECT 4240, CIP 103437, NCIMB 13161

straininfo link

  • @ref: 69927
  • straininfo: 389

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity2768470Characterization of Aeromonas schubertii strains recently isolated from traumatic wound infections.Carnahan AM, Marii MA, Fanning GR, Pass MA, Joseph SWJ Clin Microbiol10.1128/jcm.27.8.1826-1830.19891989Aeromonas/*classification/drug effects/genetics/pathogenicity, Anti-Bacterial Agents/pharmacology, Baltimore, DNA, Bacterial/analysis, Female, Hemagglutinins/analysis, Hemolysin Proteins/analysis, Humans, Male, Middle Aged, Virulence, Wound Infection/*microbiologyPhylogeny
Phylogeny3139706Aeromonas schubertii, a new mannitol-negative species found in human clinical specimens.Hickman-Brenner FW, Fanning GR, Arduino MJ, Brenner DJ, Farmer JJ 3rdJ Clin Microbiol10.1128/jcm.26.8.1561-1564.19881988Aeromonas/*classification/drug effects/genetics/metabolism, Anti-Bacterial Agents/pharmacology, Bacterial Infections/*microbiology, DNA, Bacterial/*genetics, Humans, Mannitol/metabolism, Nucleic Acid Hybridization, Phenotype, Terminology as TopicPathogenicity
Genetics26893413Complete Genome Sequence of the Type Strain of Aeromonas schubertii, ATCC 43700.Liu L, Li N, Zhang D, Fu X, Shi C, Lin QGenome Announc10.1128/genomeA.00012-162016
Phylogeny32950638Aeromonas schubertii, a novel bacterium recovered from AHPND affected farm is lethal to whiteleg shrimp, Penaeus vannamei.Sangpo P, Thitamadee S, Dong HT, Senapin SMicrob Pathog10.1016/j.micpath.2020.1045012020Aeromonas, Animals, *Penaeidae, RNA, Ribosomal, 16S/genetics, Retrospective Studies, *Vibrio/genetics, *Vibrio parahaemolyticus/genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1863Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4882)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4882
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34262Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15235
48965Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 27820)https://www.ccug.se/strain?id=27820
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69927Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389.1StrainInfo: A central database for resolving microbial strain identifiers
122515Curators of the CIPCollection of Institut Pasteur (CIP 103437)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103437