Strain identifier

BacDive ID: 24499

Type strain: Yes

Species: Roseovarius litoreus

Strain Designation: GSW-M15

Strain history: <- CCUG <- J.-H. Yoon; GSW-M15

NCBI tax ID(s): 1155722 (species)

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General

@ref: 20781

BacDive-ID: 24499

DSM-Number: 28249

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Roseovarius litoreus GSW-M15 is an aerobe, mesophilic bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1155722
  • Matching level: species

strain history

  • @ref: 20781
  • history: <- CCUG <- J.-H. Yoon; GSW-M15

doi: 10.13145/bacdive24499.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Roseovarius
  • species: Roseovarius litoreus
  • full scientific name: Roseovarius litoreus Jung et al. 2012

@ref: 20781

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Roseovarius

species: Roseovarius litoreus

full scientific name: Roseovarius litoreus Jung et al. 2012

strain designation: GSW-M15

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.515
6948099.998negative

colony morphology

@refincubation period
207812-3 days
628031 day

Culture and growth conditions

culture medium

  • @ref: 20781
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20781positivegrowth30mesophilic
62803positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62803
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no98
69480no99.998

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
20781catalase+1.11.1.6
20781cytochrome-c oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
20781+-------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
20781seawaterGeojedo, South SeaRepublic of KoreaKORAsia
62803SeawaterSouth Sea,GeojedoRepublic of KoreaKORAsia2009

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_5111.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1722;97_2061;98_3815;99_5111&stattab=map
  • Last taxonomy: Roseovarius litoreus
  • 16S sequence: JQ390520
  • Sequence Identity:
  • Total samples: 719
  • soil counts: 56
  • aquatic counts: 622
  • animal counts: 39
  • plant counts: 2

Safety information

risk assessment

  • @ref: 20781
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20781
  • description: Roseovarius litoreus strain GSW-M15 16S ribosomal RNA gene, partial sequence
  • accession: JQ390520
  • length: 1389
  • database: ena
  • NCBI tax ID: 1155722

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Roseovarius litoreus DSM 28249GCA_900142765contigncbi1155722
66792Roseovarius litoreus strain DSM 282491155722.4wgspatric1155722
66792Roseovarius litoreus DSM 282492700988728draftimg1155722

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno98no
motileno86.913no
gram-positiveno98no
anaerobicno95.786yes
aerobicyes87.017yes
halophileyes86.349no
spore-formingno95.452no
flagellatedno94.726no
thermophileno96.489yes
glucose-utilno63.219yes
glucose-fermentno91.351no

External links

@ref: 20781

culture collection no.: DSM 28249, CCUG 62218, KCTC 23897

straininfo link

  • @ref: 88357
  • straininfo: 400522

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22430766Roseovarius litoreus sp. nov., isolated from seawater of southern coast of Korean peninsula.Jung YT, Park S, Yoon JHAntonie Van Leeuwenhoek10.1007/s10482-012-9721-32012Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Ubiquinone/analysisGenetics
Phylogeny26446977Roseovarius algicolus sp. nov., isolated from culture fluid of Cochlidinium polykrikoides.Moon SB, Lee SSAntonie Van Leeuwenhoek10.1007/s10482-015-0600-62015Aerobiosis, Bacterial Typing Techniques, Base Composition, Catalase/analysis, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Dinoflagellida/*microbiology, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/analysis, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Sequence Analysis, DNA, TemperatureGenetics
Phylogeny27246498Nitropelagius marinus gen. nov., sp. nov., Isolated From Seawater, Je-bu island, South Korea [corrected].Jeong SH, Lee SSCurr Microbiol10.1007/s00284-016-1069-x2016Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Islands, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/classification/genetics/*isolation & purification/metabolism, Seawater/*microbiologyMetabolism
Phylogeny32897847Roseovarius gahaiensis sp. nov., isolated from Gahai Saline Lake, PR China.Sun X, Wang F, Liu Y, Lu YInt J Syst Evol Microbiol10.1099/ijsem.0.0044112020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/isolation & purification, *Saline Waters, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20781Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28249Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28249)
62803Curators of the CCUGhttps://www.ccug.se/strain?id=62218Culture Collection University of Gothenburg (CCUG) (CCUG 62218)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88357Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400522.1