Strain identifier

BacDive ID: 24498

Type strain: Yes

Species: Aliiroseovarius halocynthiae

Strain Designation: MA1-10

Strain history: <- KCTC

NCBI tax ID(s): 985055 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20780

BacDive-ID: 24498

DSM-Number: 27840

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, ovoid-shaped

description: Aliiroseovarius halocynthiae MA1-10 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea squirt Halocynthia roretzi.

NCBI tax id

  • NCBI tax id: 985055
  • Matching level: species

strain history

  • @ref: 20780
  • history: <- KCTC

doi: 10.13145/bacdive24498.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Aliiroseovarius
  • species: Aliiroseovarius halocynthiae
  • full scientific name: Aliiroseovarius halocynthiae (Kim et al. 2012) Park et al. 2015
  • synonyms

    @refsynonym
    20215Pseudoroseovarius halocynthiae
    20215Roseovarius halocynthiae

@ref: 20780

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Aliiroseovarius

species: Aliiroseovarius halocynthiae

full scientific name: Aliiroseovarius halocynthiae (Kim et al. 2012) Park et al. 2015

strain designation: MA1-10

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30249negative0.9-6.5 µm0.4-0.7 µmovoid-shapedyes
69480negative99.999

colony morphology

@refincubation period
207802-3 days
624272 days

pigmentation

  • @ref: 30249
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20780
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20780positivegrowth30mesophilic
30249positivegrowth10-37
30249positiveoptimum30mesophilic
62427positivegrowth30mesophilic

culture pH

  • @ref: 30249
  • ability: positive
  • type: optimum
  • pH: 07-08

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30249aerobe
62427aerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.997

halophily

@refsaltgrowthtested relationconcentration
30249NaClpositivegrowth0-6 %
30249NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
302494853esculin+hydrolysis
3024917632nitrate+reduction
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
20780catalase+1.11.1.6
20780cytochrome-c oxidase+1.9.3.1
30249acid phosphatase+3.1.3.2
30249alkaline phosphatase+3.1.3.1
30249catalase+1.11.1.6
30249cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
20780-------+---+/---------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentsampling date
20780sea squirt Halocynthia roretziHalocynthia roretziNamhaeRepublic of KoreaKORAsia
62427Sea squirt (Halocynthia roretzi)South SeaRepublic of KoreaKORAsia2009

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Tunicata

taxonmaps

  • @ref: 69479
  • File name: preview.99_118433.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_46;97_9204;98_11285;99_118433&stattab=map
  • Last taxonomy: Aliiroseovarius halocynthiae
  • 16S sequence: HQ852039
  • Sequence Identity:
  • Total samples: 1459
  • soil counts: 1
  • aquatic counts: 1414
  • animal counts: 40
  • plant counts: 4

Safety information

risk assessment

  • @ref: 20780
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20780
  • description: Roseovarius halocynthiae strain MA1-10 16S ribosomal RNA gene, partial sequence
  • accession: HQ852039
  • length: 1388
  • database: ena
  • NCBI tax ID: 985055

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aliiroseovarius halocynthiae MA1-10GCA_007004645scaffoldncbi985055
66792Aliiroseovarius halocynthiae DSM 278402617270828draftimg985055

GC content

@refGC-contentmethod
2078055.4high performance liquid chromatography (HPLC)
3024955.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
flagellatedno76.658no
gram-positiveno97.532yes
anaerobicno98.39yes
aerobicyes85.856yes
halophileyes52.998no
spore-formingno96.885no
thermophileno89.503yes
glucose-utilno50yes
motileno60.484no
glucose-fermentno90.059yes

External links

@ref: 20780

culture collection no.: DSM 27840, CCUG 60745, KCTC 23462

straininfo link

  • @ref: 88356
  • straininfo: 397538

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21669917Roseovarius halocynthiae sp. nov., isolated from the sea squirt Halocynthia roretzi.Kim YO, Kong HJ, Park S, Kang SJ, Kim WJ, Kim KK, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.031674-02011Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Ubiquinone/chemistry, Urochordata/*microbiologyGenetics
Phylogeny22941298Roseovarius sediminilitoris sp. nov., isolated from seashore sediment.Park S, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.043737-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analysisGenetics
Phylogeny25964517Aliiroseovarius pelagivivens gen. nov., sp. nov., isolated from seawater, and reclassification of three species of the genus Roseovarius as Aliiroseovarius crassostreae comb. nov., Aliiroseovarius halocynthiae comb. nov. and Aliiroseovarius sediminilitoris comb. nov.Park S, Park JM, Kang CH, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.0003152015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny26066711Pseudoroseovarius zhejiangensis gen. nov., sp. nov., a novel alpha-proteobacterium isolated from the chemical wastewater, and reclassification of Roseovarius crassostreae as Pseudoroseovarius crassostreae comb. nov., Roseovarius sediminilitoris as Pseudoroseovarius sediminilitoris comb. nov. and Roseovarius halocynthiae as Pseudoroseovarius halocynthiae comb. nov.Sun C, Pan J, Zhang XQ, Su Y, Wu MAntonie Van Leeuwenhoek10.1007/s10482-015-0480-92015Aerobiosis, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Waste Water/*microbiologyGenetics
Phylogeny31622234Aliiroseovarius marinus sp. nov., isolated from seawater.Wang Y, Zhang Y, Guo C, Liu T, Dai Y, Lin M, Cui C, Zhang Y, Zhou C, Zhu WInt J Syst Evol Microbiol10.1099/ijsem.0.0037572020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry, *Water MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20780Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27840Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27840)
30249Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172659128776041
62427Curators of the CCUGhttps://www.ccug.se/strain?id=60745Culture Collection University of Gothenburg (CCUG) (CCUG 60745)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88356Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397538.1