Strain identifier
BacDive ID: 24481
Type strain:
Species: Rhizobium mongolense subsp. loessense
Strain history: CIP <- 2003, W.X. Chen, China Agric. Univ., Beijing, China: strain CCBAU 7190B
NCBI tax ID(s): 158890 (subspecies)
General
@ref: 21027
BacDive-ID: 24481
DSM-Number: 21811
keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped
description: Rhizobium mongolense subsp. loessense DSM 21811 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from root nodule of Astragalus complanatus.
NCBI tax id
- NCBI tax id: 158890
- Matching level: subspecies
strain history
@ref | history |
---|---|
21027 | <- X. Sui, China Agric. Univ., College Biol. Sci., Beijing; CCBAU 7190B <- G. H. Wei et al. |
36682 | 2003, W. X. Chen, China Agric. Univ., Beijing, China: strain CCBAU 7190B |
120641 | CIP <- 2003, W.X. Chen, China Agric. Univ., Beijing, China: strain CCBAU 7190B |
doi: 10.13145/bacdive24481.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium mongolense subsp. loessense
- full scientific name: Rhizobium mongolense subsp. loessense (Wei et al. 2003) Hördt et al. 2020
synonyms
- @ref: 20215
- synonym: Rhizobium loessense
@ref: 21027
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium mongolense subsp. loessense
full scientific name: Rhizobium mongolense subsp. loessense (Wei et al. 2003) Hördt et al. 2020
type strain: yes
Morphology
cell morphology
- @ref: 120641
- gram stain: negative
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
21027 | YMA-MEDIUM (MODIFIED) (DSMZ Medium 1031a) | yes | https://mediadive.dsmz.de/medium/1031a | Name: YMA-MEDIUM (modified) (DSMZ Medium 1031a) Composition: Agar 20.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l K2HPO4 0.5 g/l Na glutamate 0.5 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.0528 g/l NaCl 0.05 g/l FeCl3 x 6 H2O 0.00666 g/l Distilled water |
36682 | MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g) | |
120641 | CIP Medium 57 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21027 | positive | growth | 28 | mesophilic |
36682 | positive | growth | 30 | mesophilic |
120641 | positive | growth | 25-37 | mesophilic |
120641 | no | growth | 10 | psychrophilic |
120641 | no | growth | 41 | thermophilic |
120641 | no | growth | 45 | thermophilic |
Physiology and metabolism
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
120641 | NaCl | no | growth | 0 % |
120641 | NaCl | no | growth | 2 % |
120641 | NaCl | no | growth | 4 % |
120641 | NaCl | no | growth | 6 % |
120641 | NaCl | no | growth | 8 % |
120641 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
120641 | citrate | - | carbon source | 16947 |
120641 | esculin | + | hydrolysis | 4853 |
120641 | nitrate | - | reduction | 17632 |
120641 | nitrite | - | reduction | 16301 |
metabolite production
- @ref: 120641
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
120641 | 15688 | acetoin | - | |
120641 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
120641 | oxidase | + | |
120641 | beta-galactosidase | + | 3.2.1.23 |
120641 | alcohol dehydrogenase | - | 1.1.1.1 |
120641 | gelatinase | - | |
120641 | amylase | - | |
120641 | DNase | - | |
120641 | caseinase | - | 3.4.21.50 |
120641 | catalase | + | 1.11.1.6 |
120641 | tween esterase | - | |
120641 | lecithinase | - | |
120641 | lipase | - | |
120641 | lysine decarboxylase | - | 4.1.1.18 |
120641 | ornithine decarboxylase | - | 4.1.1.17 |
120641 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
120641 | tryptophan deaminase | - | |
120641 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120641 | - | + | + | + | - | + | - | - | + | - | + | - | - | - | - | + | + | + | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120641 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120641 | + | - | + | + | + | - | + | - | + | + | - | + | + | + | + | + | + | + | + | + | + | + | - | - | - | - | + | + | + | - | - | + | + | - | + | - | - | + | - | + | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|---|
21027 | root nodule of Astragalus complanatus | Astragalus complanatus | Gan Su | China | CHN | Asia | |
120641 | Astragalus complanatus | Gansu | China | CHN | Asia | 2001 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host | #Plants | #Shrub (Scrub) |
#Host Body-Site | #Plant | #Root nodule |
taxonmaps
- @ref: 69479
- File name: preview.99_3467.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_62;97_2170;98_2662;99_3467&stattab=map
- Last taxonomy: Rhizobium
- 16S sequence: AF364069
- Sequence Identity:
- Total samples: 270
- soil counts: 105
- aquatic counts: 5
- animal counts: 6
- plant counts: 154
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
21027 | 1 | Risk group (German classification) |
120641 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 21027
- description: Rhizobium loessense strain CCBAU 7190B 16S ribosomal RNA gene, partial sequence
- accession: AF364069
- length: 1379
- database: ena
- NCBI tax ID: 158890
GC content
- @ref: 21027
- GC-content: 59.5
External links
@ref: 21027
culture collection no.: DSM 21811, CCBAU 7190B, CIP 108030, LMG 21975, AS 1.3401
straininfo link
- @ref: 88342
- straininfo: 398753
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 13130051 | Characterization of rhizobia isolated from legume species within the genera Astragalus and Lespedeza grown in the Loess Plateau of China and description of Rhizobium loessense sp. nov. | Wei GH, Tan ZY, Zhu ME, Wang ET, Han SZ, Chen WX | Int J Syst Evol Microbiol | 10.1099/ijs.0.02031-0 | 2003 | Astragalus Plant/*microbiology, Base Composition, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Genes, Bacterial, Lespedeza/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/*isolation & purification/metabolism | Genetics |
Phylogeny | 23203621 | Rhizobium tarimense sp. nov., isolated from soil in the ancient Khiyik River. | Turdahon M, Osman G, Hamdun M, Yusuf K, Abdurehim Z, Abaydulla G, Abdukerim M, Fang C, Rahman E | Int J Syst Evol Microbiol | 10.1099/ijs.0.042176-0 | 2012 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/isolation & purification, Rivers, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/analysis | Genetics |
Phylogeny | 24478208 | Rhizobium azibense sp. nov., a nitrogen fixing bacterium isolated from root-nodules of Phaseolus vulgaris. | Mnasri B, Liu TY, Saidi S, Chen WF, Chen WX, Zhang XX, Mhamdi R | Int J Syst Evol Microbiol | 10.1099/ijs.0.058651-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Mexico, Molecular Sequence Data, *Nitrogen Fixation, Nucleic Acid Hybridization, Phaseolus/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/isolation & purification/metabolism, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Spain, Tunisia | Genetics |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21027 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21811 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21811) | |
36682 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5608 | ||
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88342 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398753.1 | |
120641 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108030 | Collection of Institut Pasteur (CIP 108030) |