Strain identifier
BacDive ID: 24458
Type strain:
Species: Actinophytocola burenkhanensis
Strain Designation: MN08-A0203
Strain history: <- NBRC; NBRC 105883 <- B. Tsetseg and K. Ando; MN08-A0203
NCBI tax ID(s): 696000 (species)
General
@ref: 21208
BacDive-ID: 24458
DSM-Number: 46707
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Actinophytocola burenkhanensis MN08-A0203 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 696000
- Matching level: species
strain history
- @ref: 21208
- history: <- NBRC; NBRC 105883 <- B. Tsetseg and K. Ando; MN08-A0203
doi: 10.13145/bacdive24458.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinophytocola
- species: Actinophytocola burenkhanensis
- full scientific name: Actinophytocola burenkhanensis Ara et al. 2011
@ref: 21208
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinophytocola
species: Actinophytocola burenkhanensis
full scientific name: Actinophytocola burenkhanensis Ara et al. 2011
strain designation: MN08-A0203
type strain: yes
Morphology
cell morphology
- @ref: 29812
- gram stain: positive
- motility: no
pigmentation
- @ref: 29812
- production: yes
multimedia
- @ref: 21208
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46707.jpg
- caption: Medium 548 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
21208 | BENNETT'S AGAR (DSMZ Medium 548) | yes | https://mediadive.dsmz.de/medium/548 | Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water |
21208 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21208 | positive | growth | 28 | mesophilic |
29812 | positive | growth | 15-30 | |
29812 | positive | optimum | 27.5 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29812 | positive | growth | 05-09 | alkaliphile |
29812 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 29812
- oxygen tolerance: aerobe
spore formation
- @ref: 29812
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29812 | NaCl | positive | growth | 0-3 % |
29812 | NaCl | positive | optimum | 1 % |
observation
- @ref: 29812
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29812 | 22599 | arabinose | + | carbon source |
29812 | 28260 | galactose | + | carbon source |
29812 | 5291 | gelatin | + | carbon source |
29812 | 17234 | glucose | + | carbon source |
29812 | 17716 | lactose | + | carbon source |
29812 | 17306 | maltose | + | carbon source |
29812 | 37684 | mannose | + | carbon source |
29812 | 26546 | rhamnose | + | carbon source |
29812 | 33942 | ribose | + | carbon source |
29812 | 16199 | urea | + | carbon source |
29812 | 18222 | xylose | + | carbon source |
29812 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
29812 | acid phosphatase | + | 3.1.3.2 |
29812 | alkaline phosphatase | + | 3.1.3.1 |
29812 | alpha-galactosidase | + | 3.2.1.22 |
29812 | gelatinase | + | |
29812 | pyrazinamidase | + | 3.5.1.B15 |
29812 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 21208
- sample type: soil
- geographic location: Khuvsgul Province, Burenkhan
- country: Mongolia
- origin.country: MNG
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 21208
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21208
- description: Actinophytocola burenkhanensis gene for 16S rRNA, partial sequence
- accession: AB535095
- length: 1458
- database: ena
- NCBI tax ID: 696000
GC content
- @ref: 21208
- GC-content: 70.6
External links
@ref: 21208
culture collection no.: DSM 46707, NBRC 105883, VTCC D9-23
straininfo link
- @ref: 88333
- straininfo: 403475
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 20511457 | Actinophytocola burenkhanensis sp. nov., isolated from Mongolian soil. | Ara I, Tsetseg B, Daram D, Suto M, Ando K | Int J Syst Evol Microbiol | 10.1099/ijs.0.021659-0 | 2010 | Actinomycetales/*classification/genetics/*isolation & purification/metabolism, China, DNA, Bacterial/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Metabolism |
Phylogeny | 24944338 | Actinophytocola gilvus sp. nov., isolated from desert soil crusts, and emended description of the genus Actinophytocola Indananda et al. 2010. | Sun HM, Zhang T, Yu LY, Lu XX, Mou XZ, Zhang YQ | Int J Syst Evol Microbiol | 10.1099/ijs.0.061051-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21208 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46707 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46707) | |||
29812 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26189 | 28776041 | |
88333 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403475.1 |