Strain identifier

BacDive ID: 24457

Type strain: Yes

Species: Allokutzneria multivorans

Strain history: S.-K. Tang and Y.-R. Cao YIM 120521.

NCBI tax ID(s): 1142134 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21186

BacDive-ID: 24457

DSM-Number: 45532

keywords: 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Allokutzneria multivorans DSM 45532 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from river bank soil.

NCBI tax id

  • NCBI tax id: 1142134
  • Matching level: species

strain history

@refhistory
21186<- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 120521 <- Y.-R. Cao
67770S.-K. Tang and Y.-R. Cao YIM 120521.

doi: 10.13145/bacdive24457.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Allokutzneria
  • species: Allokutzneria multivorans
  • full scientific name: Allokutzneria multivorans Cao et al. 2013

@ref: 21186

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Allokutzneria

species: Allokutzneria multivorans

full scientific name: Allokutzneria multivorans Cao et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 31162
  • gram stain: positive

pigmentation

  • @ref: 31162
  • production: no

Culture and growth conditions

culture medium

  • @ref: 21186
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21186positivegrowth28mesophilic
31162positivegrowth04-40
31162positiveoptimum28mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
31162positivegrowth6.0-9.0alkaliphile
31162positiveoptimum7

Physiology and metabolism

spore formation

  • @ref: 31162
  • spore formation: yes

halophily

  • @ref: 31162
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-4 %

observation

@refobservation
31162aggregates in chains
67770quinones: MK-9(H4), MK-9(H2), MK-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3116222599arabinose+carbon source
3116217057cellobiose+carbon source
3116223652dextrin+carbon source
3116228757fructose+carbon source
3116233984fucose+carbon source
3116228260galactose+carbon source
3116217234glucose+carbon source
3116217754glycerol+carbon source
3116217716lactose+carbon source
3116225115malate+carbon source
3116217306maltose+carbon source
3116229864mannitol+carbon source
3116237684mannose+carbon source
3116216634raffinose+carbon source
3116226546rhamnose+carbon source
3116217822serine+carbon source
3116230911sorbitol+carbon source
3116230031succinate+carbon source
3116218222xylose+carbon source

enzymes

  • @ref: 31162
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21186river bank soilYunnan, Nujiang RiverChinaCHNAsia
67770Banks of the Nujiang RiverYunnan Province, south-west ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#River (Creek)
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_29442.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_549;97_634;98_732;99_29442&stattab=map
  • Last taxonomy: Allokutzneria multivorans
  • 16S sequence: JQ306329
  • Sequence Identity:
  • Total samples: 56
  • soil counts: 28
  • animal counts: 4
  • plant counts: 24

Safety information

risk assessment

  • @ref: 21186
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21186
  • description: Allokutzneria multivorans strain YIM 120521 16S ribosomal RNA gene, partial sequence
  • accession: JQ306329
  • length: 1521
  • database: ena
  • NCBI tax ID: 1142134

GC content

@refGC-contentmethod
2118669.1high performance liquid chromatography (HPLC)
3116269.1

External links

@ref: 21186

culture collection no.: DSM 45532, JCM 17342, YIM 120521

straininfo link

  • @ref: 88332
  • straininfo: 399044

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23811139Allokutzneria multivorans sp. nov., an actinomycete isolated from soil.Cao YR, Chen X, Jiang Y, Wang LS, Jiang CLInt J Syst Evol Microbiol10.1099/ijs.0.054411-02013Actinomycetales/*classification/genetics/isolation & purification, Base Composition, Carbohydrates/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny25052392Allokutzneria oryzae sp. nov., isolated from rhizospheric soil of Oryza sativa L.Duangmal K, Poomthongdee N, Pathom-Aree W, Take A, Thamchaipenet A, Matsumoto A, Takahashi YInt J Syst Evol Microbiol10.1099/ijs.0.065169-02014Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21186Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45532Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45532)
31162Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172749028776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88332Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399044.1