Strain identifier
BacDive ID: 24457
Type strain:
Species: Allokutzneria multivorans
Strain history: S.-K. Tang and Y.-R. Cao YIM 120521.
NCBI tax ID(s): 1142134 (species)
General
@ref: 21186
BacDive-ID: 24457
DSM-Number: 45532
keywords: 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Allokutzneria multivorans DSM 45532 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from river bank soil.
NCBI tax id
- NCBI tax id: 1142134
- Matching level: species
strain history
@ref | history |
---|---|
21186 | <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 120521 <- Y.-R. Cao |
67770 | S.-K. Tang and Y.-R. Cao YIM 120521. |
doi: 10.13145/bacdive24457.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Allokutzneria
- species: Allokutzneria multivorans
- full scientific name: Allokutzneria multivorans Cao et al. 2013
@ref: 21186
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Allokutzneria
species: Allokutzneria multivorans
full scientific name: Allokutzneria multivorans Cao et al. 2013
type strain: yes
Morphology
cell morphology
- @ref: 31162
- gram stain: positive
pigmentation
- @ref: 31162
- production: no
Culture and growth conditions
culture medium
- @ref: 21186
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21186 | positive | growth | 28 | mesophilic |
31162 | positive | growth | 04-40 | |
31162 | positive | optimum | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31162 | positive | growth | 6.0-9.0 | alkaliphile |
31162 | positive | optimum | 7 |
Physiology and metabolism
spore formation
- @ref: 31162
- spore formation: yes
halophily
- @ref: 31162
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-4 %
observation
@ref | observation |
---|---|
31162 | aggregates in chains |
67770 | quinones: MK-9(H4), MK-9(H2), MK-9 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31162 | 22599 | arabinose | + | carbon source |
31162 | 17057 | cellobiose | + | carbon source |
31162 | 23652 | dextrin | + | carbon source |
31162 | 28757 | fructose | + | carbon source |
31162 | 33984 | fucose | + | carbon source |
31162 | 28260 | galactose | + | carbon source |
31162 | 17234 | glucose | + | carbon source |
31162 | 17754 | glycerol | + | carbon source |
31162 | 17716 | lactose | + | carbon source |
31162 | 25115 | malate | + | carbon source |
31162 | 17306 | maltose | + | carbon source |
31162 | 29864 | mannitol | + | carbon source |
31162 | 37684 | mannose | + | carbon source |
31162 | 16634 | raffinose | + | carbon source |
31162 | 26546 | rhamnose | + | carbon source |
31162 | 17822 | serine | + | carbon source |
31162 | 30911 | sorbitol | + | carbon source |
31162 | 30031 | succinate | + | carbon source |
31162 | 18222 | xylose | + | carbon source |
enzymes
- @ref: 31162
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
21186 | river bank soil | Yunnan, Nujiang River | China | CHN | Asia |
67770 | Banks of the Nujiang River | Yunnan Province, south-west China | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #River (Creek) |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_29442.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_549;97_634;98_732;99_29442&stattab=map
- Last taxonomy: Allokutzneria multivorans
- 16S sequence: JQ306329
- Sequence Identity:
- Total samples: 56
- soil counts: 28
- animal counts: 4
- plant counts: 24
Safety information
risk assessment
- @ref: 21186
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21186
- description: Allokutzneria multivorans strain YIM 120521 16S ribosomal RNA gene, partial sequence
- accession: JQ306329
- length: 1521
- database: ena
- NCBI tax ID: 1142134
GC content
@ref | GC-content | method |
---|---|---|
21186 | 69.1 | high performance liquid chromatography (HPLC) |
31162 | 69.1 |
External links
@ref: 21186
culture collection no.: DSM 45532, JCM 17342, YIM 120521
straininfo link
- @ref: 88332
- straininfo: 399044
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 23811139 | Allokutzneria multivorans sp. nov., an actinomycete isolated from soil. | Cao YR, Chen X, Jiang Y, Wang LS, Jiang CL | Int J Syst Evol Microbiol | 10.1099/ijs.0.054411-0 | 2013 | Actinomycetales/*classification/genetics/isolation & purification, Base Composition, Carbohydrates/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 25052392 | Allokutzneria oryzae sp. nov., isolated from rhizospheric soil of Oryza sativa L. | Duangmal K, Poomthongdee N, Pathom-Aree W, Take A, Thamchaipenet A, Matsumoto A, Takahashi Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.065169-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21186 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45532 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45532) | |||
31162 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27490 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
88332 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399044.1 |