Strain identifier
BacDive ID: 24449
Type strain:
Species: Pseudonocardia hierapolitana
Strain Designation: PM2084, 5NRRL B-24879
Strain history: <- Nevzat Sahin, Ondokuz Mayis Univ., Turkey
NCBI tax ID(s): 1128676 (species)
General
@ref: 20751
BacDive-ID: 24449
DSM-Number: 45671
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Pseudonocardia hierapolitana PM2084 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1128676
- Matching level: species
strain history
@ref | history |
---|---|
20751 | <- N. Sahin, Ondokuz Mayis University; PM2084 <- M. Camas |
67771 | <- Nevzat Sahin, Ondokuz Mayis Univ., Turkey |
doi: 10.13145/bacdive24449.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia hierapolitana
- full scientific name: Pseudonocardia hierapolitana Sahin et al. 2014
@ref: 20751
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia hierapolitana
full scientific name: Pseudonocardia hierapolitana Sahin et al. 2014
strain designation: PM2084, 5NRRL B-24879
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence |
---|---|---|
67771 | positive | |
69480 | positive | 100 |
Culture and growth conditions
culture medium
- @ref: 20751
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20751 | positive | growth | 28 | mesophilic |
67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 99.701
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
20751 | soil | Denizli, Pamukkale, Hierapolis | Turkey | TUR | Asia |
67771 | From soil, Thermal occurence | Pamukkale | Turkey | TUR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 20751
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20751
- description: Pseudonocardia hierapolitana strain PM2084 16S ribosomal RNA gene, partial sequence
- accession: JN989288
- length: 1458
- database: ena
- NCBI tax ID: 1128676
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Pseudonocardia hierapolitana DSM 45671 | GCA_007994075 | contig | ncbi | 1128676 |
66792 | Pseudonocardia hierapolitana strain DSM 45671 | 1128676.3 | wgs | patric | 1128676 |
66792 | Pseudonocardia hierapolitana DSM 45671 | 2818991474 | draft | img | 1128676 |
GC content
- @ref: 20751
- GC-content: 72.8
- method: fluorimetric
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 85 | no |
motile | no | 87.721 | no |
flagellated | no | 97.637 | no |
gram-positive | yes | 86.549 | yes |
anaerobic | no | 98.955 | yes |
halophile | no | 86.225 | no |
spore-forming | yes | 79.138 | no |
glucose-util | yes | 82.363 | no |
aerobic | yes | 90.904 | yes |
thermophile | no | 99.25 | yes |
glucose-ferment | no | 89.79 | no |
External links
@ref: 20751
culture collection no.: DSM 45671, KCTC 29068, NRRL B-24879
straininfo link
- @ref: 88326
- straininfo: 403307
literature
- topic: Phylogeny
- Pubmed-ID: 24523445
- title: Pseudonocardia cypriaca sp. nov., Pseudonocardia salamisensis sp. nov., Pseudonocardia hierapolitana sp. nov. and Pseudonocardia kujensis sp. nov., isolated from soil.
- authors: Sahin N, Veyisoglu A, Tatar D, Sproer C, Cetin D, Guven K, Klenk HP
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.059824-0
- year: 2014
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Cell Wall/chemistry, Cyprus, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nigeria, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, *Soil Microbiology, Turkey, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20751 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45671 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45671) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
88326 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403307.1 |