Strain identifier

BacDive ID: 24449

Type strain: Yes

Species: Pseudonocardia hierapolitana

Strain Designation: PM2084, 5NRRL B-24879

Strain history: <- Nevzat Sahin, Ondokuz Mayis Univ., Turkey

NCBI tax ID(s): 1128676 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20751

BacDive-ID: 24449

DSM-Number: 45671

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Pseudonocardia hierapolitana PM2084 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1128676
  • Matching level: species

strain history

@refhistory
20751<- N. Sahin, Ondokuz Mayis University; PM2084 <- M. Camas
67771<- Nevzat Sahin, Ondokuz Mayis Univ., Turkey

doi: 10.13145/bacdive24449.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Pseudonocardia
  • species: Pseudonocardia hierapolitana
  • full scientific name: Pseudonocardia hierapolitana Sahin et al. 2014

@ref: 20751

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Pseudonocardia

species: Pseudonocardia hierapolitana

full scientific name: Pseudonocardia hierapolitana Sahin et al. 2014

strain designation: PM2084, 5NRRL B-24879

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
67771positive
69480positive100

Culture and growth conditions

culture medium

  • @ref: 20751
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20751positivegrowth28mesophilic
67771positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 99.701

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20751soilDenizli, Pamukkale, HierapolisTurkeyTURAsia
67771From soil, Thermal occurencePamukkaleTurkeyTURAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 20751
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20751
  • description: Pseudonocardia hierapolitana strain PM2084 16S ribosomal RNA gene, partial sequence
  • accession: JN989288
  • length: 1458
  • database: ena
  • NCBI tax ID: 1128676

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudonocardia hierapolitana DSM 45671GCA_007994075contigncbi1128676
66792Pseudonocardia hierapolitana strain DSM 456711128676.3wgspatric1128676
66792Pseudonocardia hierapolitana DSM 456712818991474draftimg1128676

GC content

  • @ref: 20751
  • GC-content: 72.8
  • method: fluorimetric

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes85no
motileno87.721no
flagellatedno97.637no
gram-positiveyes86.549yes
anaerobicno98.955yes
halophileno86.225no
spore-formingyes79.138no
glucose-utilyes82.363no
aerobicyes90.904yes
thermophileno99.25yes
glucose-fermentno89.79no

External links

@ref: 20751

culture collection no.: DSM 45671, KCTC 29068, NRRL B-24879

straininfo link

  • @ref: 88326
  • straininfo: 403307

literature

  • topic: Phylogeny
  • Pubmed-ID: 24523445
  • title: Pseudonocardia cypriaca sp. nov., Pseudonocardia salamisensis sp. nov., Pseudonocardia hierapolitana sp. nov. and Pseudonocardia kujensis sp. nov., isolated from soil.
  • authors: Sahin N, Veyisoglu A, Tatar D, Sproer C, Cetin D, Guven K, Klenk HP
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.059824-0
  • year: 2014
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Cell Wall/chemistry, Cyprus, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nigeria, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, *Soil Microbiology, Turkey, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20751Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45671Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45671)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
88326Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403307.1