Strain identifier
BacDive ID: 24448
Type strain: 
Species: Pseudonocardia salamisensis
Strain Designation: K236
Strain history: <- Nevzat Sahin
NCBI tax ID(s): 1187856 (species)
version 8.1 (current version)
General
@ref: 20750
BacDive-ID: 24448
DSM-Number: 45717
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Pseudonocardia salamisensis K236 is an aerobe, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1187856
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20750 | <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Samsun, Turkey; K236 <- A. Veyisoglu |
| 67771 | <- Nevzat Sahin |
doi: 10.13145/bacdive24448.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia salamisensis
- full scientific name: Pseudonocardia salamisensis Sahin et al. 2014
@ref: 20750
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia salamisensis
full scientific name: Pseudonocardia salamisensis Sahin et al. 2014
strain designation: K236
type strain: yes
Culture and growth conditions
culture medium
- @ref: 20750
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20750 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 20750 | soil | Magusa, Karpaz, Salamis, Agricultural Estate | Cyprus | CYP | Europe |
| 67771 | Soil, Agricultural Estate | Cyprus | CYP | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_118127.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1626;97_1946;98_79715;99_118127&stattab=map
- Last taxonomy: Pseudonocardia salamisensis subclade
- 16S sequence: JQ864427
- Sequence Identity:
- Total samples: 378
- soil counts: 366
- aquatic counts: 6
- animal counts: 2
- plant counts: 4
Safety information
risk assessment
- @ref: 20750
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20750
- description: Pseudonocardia salamisensis strain K236 16S ribosomal RNA gene, partial sequence
- accession: JQ864427
- length: 1465
- database: ena
- NCBI tax ID: 1187856
GC content
- @ref: 20750
- GC-content: 73.2
- method: fluorimetric
External links
@ref: 20750
culture collection no.: DSM 45717, KCTC 29100
straininfo link
- @ref: 88325
- straininfo: 405256
literature
- topic: Phylogeny
- Pubmed-ID: 24523445
- title: Pseudonocardia cypriaca sp. nov., Pseudonocardia salamisensis sp. nov., Pseudonocardia hierapolitana sp. nov. and Pseudonocardia kujensis sp. nov., isolated from soil.
- authors: Sahin N, Veyisoglu A, Tatar D, Sproer C, Cetin D, Guven K, Klenk HP
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.059824-0
- year: 2014
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Cell Wall/chemistry, Cyprus, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nigeria, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, *Soil Microbiology, Turkey, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20750 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45717 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45717) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88325 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405256.1 |