Strain identifier

BacDive ID: 24348

Type strain: Yes

Species: Mariniluteicoccus flavus

Strain history: CCTCC AB 2012055 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM M13146.

NCBI tax ID(s): 1397367 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21319

BacDive-ID: 24348

DSM-Number: 25892

keywords: 16S sequence, Bacteria, mesophilic

description: Mariniluteicoccus flavus DSM 25892 is a mesophilic bacterium that was isolated from deep-sea sediment.

NCBI tax id

  • NCBI tax id: 1397367
  • Matching level: species

strain history

@refhistory
21319<- S.-K. Tang, YIM; YIM M13146 <- D.-F. Zhang
67770CCTCC AB 2012055 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM M13146.

doi: 10.13145/bacdive24348.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Mariniluteicoccus
  • species: Mariniluteicoccus flavus
  • full scientific name: Mariniluteicoccus flavus Zhang et al. 2014

@ref: 21319

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Mariniluteicoccus

species: Mariniluteicoccus flavus

full scientific name: Mariniluteicoccus flavus Zhang et al. 2014

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21319
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21319positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
21319deep-sea sedimentSouth China Sea (18° 1.654' N 112° 30.203' E) at a depth of 2439 mChinaCHNAsia18.0276112.503
67770Sediment from the South China Sea (18° 1.654' N 112° 30.203' E) at a depth of 2,439 m18.0276112.503

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_122166.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_72;96_32762;97_41492;98_82187;99_122166&stattab=map
  • Last taxonomy: Mariniluteicoccus flavus subclade
  • 16S sequence: KF564278
  • Sequence Identity:
  • Total samples: 272
  • soil counts: 62
  • aquatic counts: 57
  • animal counts: 134
  • plant counts: 19

Safety information

risk assessment

  • @ref: 21319
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21319
  • description: Mariniluteicoccus flavus strain YIM M13146 16S ribosomal RNA gene, complete sequence
  • accession: KF564278
  • length: 1536
  • database: ena
  • NCBI tax ID: 1397367

GC content

  • @ref: 21319
  • GC-content: 67.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21319

culture collection no.: DSM 25892, CCTCC AB 2012055, YIM M13146, JCM 32121

straininfo link

  • @ref: 88274
  • straininfo: 407658

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24363295Mariniluteicoccus flavus gen. nov., sp. nov., a new member of the family Propionibacteriaceae, isolated from a deep-sea sediment.Zhang DF, Wang HF, Xiong ZJ, Tian XP, Liu L, Zhang XM, Jiang Z, Zhang S, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.058404-02013Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water MicrobiologyGenetics
Phylogeny26742722Mariniluteicoccus endophyticus sp. nov., an endophytic actinobacterium isolated from root of Ocimum basilicum.Liu BB, Chen W, Chu X, Yang Y, Salam N, Hu WY, Gao R, Duan YQ, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0008802016

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21319Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25892Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25892)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88274Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407658.1