Strain identifier
BacDive ID: 24348
Type strain:
Species: Mariniluteicoccus flavus
Strain history: CCTCC AB 2012055 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM M13146.
NCBI tax ID(s): 1397367 (species)
General
@ref: 21319
BacDive-ID: 24348
DSM-Number: 25892
keywords: 16S sequence, Bacteria, mesophilic
description: Mariniluteicoccus flavus DSM 25892 is a mesophilic bacterium that was isolated from deep-sea sediment.
NCBI tax id
- NCBI tax id: 1397367
- Matching level: species
strain history
@ref | history |
---|---|
21319 | <- S.-K. Tang, YIM; YIM M13146 <- D.-F. Zhang |
67770 | CCTCC AB 2012055 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM M13146. |
doi: 10.13145/bacdive24348.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Mariniluteicoccus
- species: Mariniluteicoccus flavus
- full scientific name: Mariniluteicoccus flavus Zhang et al. 2014
@ref: 21319
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Propionibacteriaceae
genus: Mariniluteicoccus
species: Mariniluteicoccus flavus
full scientific name: Mariniluteicoccus flavus Zhang et al. 2014
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21319
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21319 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
21319 | deep-sea sediment | South China Sea (18° 1.654' N 112° 30.203' E) at a depth of 2439 m | China | CHN | Asia | 18.0276 | 112.503 |
67770 | Sediment from the South China Sea (18° 1.654' N 112° 30.203' E) at a depth of 2,439 m | 18.0276 | 112.503 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_122166.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_72;96_32762;97_41492;98_82187;99_122166&stattab=map
- Last taxonomy: Mariniluteicoccus flavus subclade
- 16S sequence: KF564278
- Sequence Identity:
- Total samples: 272
- soil counts: 62
- aquatic counts: 57
- animal counts: 134
- plant counts: 19
Safety information
risk assessment
- @ref: 21319
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21319
- description: Mariniluteicoccus flavus strain YIM M13146 16S ribosomal RNA gene, complete sequence
- accession: KF564278
- length: 1536
- database: ena
- NCBI tax ID: 1397367
GC content
- @ref: 21319
- GC-content: 67.2
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21319
culture collection no.: DSM 25892, CCTCC AB 2012055, YIM M13146, JCM 32121
straininfo link
- @ref: 88274
- straininfo: 407658
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24363295 | Mariniluteicoccus flavus gen. nov., sp. nov., a new member of the family Propionibacteriaceae, isolated from a deep-sea sediment. | Zhang DF, Wang HF, Xiong ZJ, Tian XP, Liu L, Zhang XM, Jiang Z, Zhang S, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.058404-0 | 2013 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology | Genetics |
Phylogeny | 26742722 | Mariniluteicoccus endophyticus sp. nov., an endophytic actinobacterium isolated from root of Ocimum basilicum. | Liu BB, Chen W, Chu X, Yang Y, Salam N, Hu WY, Gao R, Duan YQ, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000880 | 2016 |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21319 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25892 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25892) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88274 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407658.1 |