Strain identifier
BacDive ID: 24347
Type strain: 
Species: Luteococcus sediminum
Strain Designation: XH208
Strain history: X.-H. Zhang and X. Fan XH208.
NCBI tax ID(s): 1343102 (species)
version 8.1 (current version)
General
@ref: 20639
BacDive-ID: 24347
DSM-Number: 27277
keywords: 16S sequence, Bacteria, mesophilic
description: Luteococcus sediminum XH208 is a mesophilic bacterium that was isolated from deep subseafloor sediment.
NCBI tax id
- NCBI tax id: 1343102
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20639 | <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; XH208 |
| 67770 | X.-H. Zhang and X. Fan XH208. |
doi: 10.13145/bacdive24347.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Luteococcus
- species: Luteococcus sediminum
- full scientific name: Luteococcus sediminum Fan et al. 2014
@ref: 20639
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Propionibacteriaceae
genus: Luteococcus
species: Luteococcus sediminum
full scientific name: Luteococcus sediminum Fan et al. 2014
strain designation: XH208
type strain: yes
Culture and growth conditions
culture medium
- @ref: 20639
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20639 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
murein
- @ref: 20639
- murein short key: A41.01
- type: A3gamma LL-Dpm-Gly
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | latitude | longitude |
|---|---|---|---|---|
| 20639 | deep subseafloor sediment | South Pacific Gyre at station U1371 (41° 58' S 163° 11' W, 123.2–123.3 m below the sea floor) | -45.9667 | -163.183 |
| 67770 | Deep subseafloor sediment of the South Pacific Gyre |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_121805.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_47897;97_61569;98_81966;99_121805&stattab=map
- Last taxonomy: Luteococcus sediminum subclade
- 16S sequence: KC986353
- Sequence Identity:
- Total samples: 1447
- soil counts: 149
- aquatic counts: 229
- animal counts: 997
- plant counts: 72
Safety information
risk assessment
- @ref: 20639
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20639
- description: Luteococcus sediminum strain XH208 16S ribosomal RNA gene, partial sequence
- accession: KC986353
- length: 1442
- database: ena
- NCBI tax ID: 1343102
GC content
- @ref: 20639
- GC-content: 66.9
- method: high performance liquid chromatography (HPLC)
External links
@ref: 20639
culture collection no.: DSM 27277, JCM 19259
straininfo link
- @ref: 88273
- straininfo: 405207
literature
- topic: Phylogeny
- Pubmed-ID: 24812361
- title: Luteococcus sediminum sp. nov., isolated from deep subseafloor sediment of the South Pacific Gyre.
- authors: Fan X, Zhang Z, Li Z, Zhang XH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.058529-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Pacific Ocean, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20639 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27277 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27277) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88273 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405207.1 |