Strain identifier
BacDive ID: 24345
Type strain: 
Species: Isoptericola chiayiensis
Strain Designation: 06182M-1
Strain history: BCRC 16888 <-- M. Tseng 06182M-1.
NCBI tax ID(s): 579446 (species)
version 8.1 (current version)
General
@ref: 20612
BacDive-ID: 24345
DSM-Number: 27643
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Isoptericola chiayiensis 06182M-1 is a mesophilic, Gram-positive bacterium that was isolated from mangrove soil.
NCBI tax id
- NCBI tax id: 579446
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20612 | <- KCTC; KCTC 19740 |
| 67770 | BCRC 16888 <-- M. Tseng 06182M-1. |
doi: 10.13145/bacdive24345.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Promicromonosporaceae
- genus: Isoptericola
- species: Isoptericola chiayiensis
- full scientific name: Isoptericola chiayiensis Tseng et al. 2011
@ref: 20612
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Promicromonosporaceae
genus: Isoptericola
species: Isoptericola chiayiensis
full scientific name: Isoptericola chiayiensis Tseng et al. 2011
strain designation: 06182M-1
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 97.11 | no |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 20612 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 20612 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf | |
| 20612 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20612 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.981
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-9(H2)
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 20612 | mangrove soil | Taiwan | TWN | Asia |
| 67770 | Mangrove soil from Chiayi County | Taiwan | TWN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_44752.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1778;97_25608;98_32469;99_44752&stattab=map
- Last taxonomy: Isoptericola
- 16S sequence: FJ469988
- Sequence Identity:
- Total samples: 40
- soil counts: 29
- aquatic counts: 2
- animal counts: 9
Safety information
risk assessment
- @ref: 20612
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20612
- description: Isoptericola chiayiensis strain 06182M-1 16S ribosomal RNA gene, partial sequence
- accession: FJ469988
- length: 1518
- database: ena
- NCBI tax ID: 579446
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Isoptericola chiayiensis KCTC 19740 | GCA_013149805 | scaffold | ncbi | 579446 |
| 66792 | Isoptericola chiayiensis strain KCTC 19740 | 579446.14 | wgs | patric | 579446 |
| 66792 | Isoptericola chiayiensis KCTC 19740 | 2849274716 | draft | img | 579446 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 20612 | 72.8 | |
| 67770 | 72.8 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 62 | no |
| motile | no | 90.958 | no |
| flagellated | no | 97.424 | no |
| gram-positive | yes | 87.146 | no |
| anaerobic | no | 99.401 | no |
| aerobic | yes | 88.615 | no |
| halophile | no | 77.213 | no |
| spore-forming | no | 81.163 | no |
| glucose-util | yes | 89.292 | no |
| thermophile | no | 98.262 | yes |
| glucose-ferment | no | 80.613 | no |
External links
@ref: 20612
culture collection no.: DSM 27643, BCRC 16888, JCM 18063, KCTC 19740
straininfo link
- @ref: 88271
- straininfo: 362747
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20729312 | Isoptericola chiayiensis sp. nov., isolated from mangrove soil. | Tseng M, Liao HC, Chiang WP, Yuan GF | Int J Syst Evol Microbiol | 10.1099/ijs.0.022491-0 | 2010 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Taiwan, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 33475779 | Isoptericola sediminis sp. nov., Isolated from Chilika Lagoon. | Kumar D, U J, A K, G S, Sasikala C, Ramana CV | Curr Microbiol | 10.1007/s00284-020-02325-4 | 2021 | Actinobacteria, Bacterial Typing Techniques, DNA, Bacterial/genetics, *Fatty Acids/analysis, India, Nucleic Acid Hybridization, *Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
| Metabolism | 34323355 | Chemical Constituents from a Mangrove-Derived Actinobacteria Isoptericola chiayiensis BCRC 16888 and Evaluation of Their Anti-NO Activity. | Su YS, Cheng MJ, Wu MD, Chai CY, Kwan AL, Su SH, Kuo YH | Chem Biodivers | 10.1002/cbdv.202100211 | 2021 | Actinobacteria/*chemistry/metabolism, Animals, Cell Survival/drug effects, Flavonoids/*chemistry/isolation & purification/pharmacology, Lipopolysaccharides/pharmacology, Macrophages/cytology/drug effects/metabolism, Magnetic Resonance Spectroscopy, Mice, Molecular Conformation, Nitric Oxide/metabolism, RAW 264.7 Cells, Sesquiterpenes/*chemistry/isolation & purification/pharmacology, Soil Microbiology | Pathogenicity |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20612 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27643 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27643) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 88271 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID362747.1 |