Strain identifier
BacDive ID: 24339
Type strain:
Species: Falsiporphyromonas endometrii
Strain Designation: 9_9A1
Strain history: <- K. Wagener, Veterinärmed. Univ., Inst. Bacteriology, Mycology and Hygiene, Vienna, Austria
NCBI tax ID(s): 1387297 (species)
General
@ref: 21307
BacDive-ID: 24339
DSM-Number: 27210
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, animal pathogen
description: Falsiporphyromonas endometrii 9_9A1 is an anaerobe, mesophilic animal pathogen that was isolated from bovine post-partum endometrium of a Holstein cow.
NCBI tax id
- NCBI tax id: 1387297
- Matching level: species
strain history
- @ref: 21307
- history: <- K. Wagener, Veterinärmed. Univ., Inst. Bacteriology, Mycology and Hygiene, Vienna, Austria
doi: 10.13145/bacdive24339.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Porphyromonadaceae
- genus: Falsiporphyromonas
- species: Falsiporphyromonas endometrii
- full scientific name: Falsiporphyromonas endometrii Wagener et al. 2014
@ref: 21307
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Porphyromonadaceae
genus: Falsiporphyromonas
species: Falsiporphyromonas endometrii
full scientific name: Falsiporphyromonas endometrii Wagener et al. 2014
strain designation: 9_9A1
type strain: yes
Morphology
colony morphology
@ref | incubation period |
---|---|
21307 | 1-2 days |
63112 | 1 day |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
21307 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
21307 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21307 | positive | growth | 37 | mesophilic |
63112 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
21307 | anaerobe |
63112 | anaerobe |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | + | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | + | |
68380 | alanine arylamidase | + | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | - | |
68380 | alkaline phosphatase | + | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | - | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21307 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | + | + | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
21307 | bovine post-partum endometrium of a Holstein cow | Klein Bennebek, Friedrichsanbau | Germany | DEU | Europe | |
63112 | Bovine uterus | 2010-08-21 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body-Site | #Urogenital tract |
taxonmaps
- @ref: 69479
- File name: preview.99_132220.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11822;96_51412;97_66213;98_88441;99_132220&stattab=map
- Last taxonomy: Falsiporphyromonas endometrii subclade
- 16S sequence: HF969314
- Sequence Identity:
- Total samples: 1958
- soil counts: 78
- aquatic counts: 195
- animal counts: 1671
- plant counts: 14
Safety information
risk assessment
- @ref: 21307
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21307
- description: Falsiporphyromonas endometrii partial 16S rRNA gene, isolate LMM 40
- accession: HF969314
- length: 1459
- database: ena
- NCBI tax ID: 1387297
GC content
- @ref: 21307
- GC-content: 40.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21307
culture collection no.: DSM 27210, CCUG 64267, LMM 40
straininfo link
- @ref: 88265
- straininfo: 406050
literature
- topic: Phylogeny
- Pubmed-ID: 24158948
- title: Falsiporphyromonas endometrii gen. nov., sp. nov., isolated from the post-partum bovine uterus, and emended description of the genus Porphyromonas Shah and Collins 1988.
- authors: Wagener K, Drillich M, Baumgardt S, Kampfer P, Busse HJ, Ehling-Schulz M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.057307-0
- year: 2013
- mesh: Animals, Bacterial Typing Techniques, Bacteroidaceae/*classification/genetics/isolation & purification, Base Composition, Cattle/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Female, Glycolipids/chemistry, Molecular Sequence Data, Peptidoglycan/chemistry, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, Porphyromonas/classification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/chemistry, Uterus/*microbiology, Vitamin K 2/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21307 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27210 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27210) | |
63112 | Curators of the CCUG | https://www.ccug.se/strain?id=64267 | Culture Collection University of Gothenburg (CCUG) (CCUG 64267) | |
68380 | Automatically annotated from API rID32A | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88265 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406050.1 |