Strain identifier

BacDive ID: 24339

Type strain: Yes

Species: Falsiporphyromonas endometrii

Strain Designation: 9_9A1

Strain history: <- K. Wagener, Veterinärmed. Univ., Inst. Bacteriology, Mycology and Hygiene, Vienna, Austria

NCBI tax ID(s): 1387297 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21307

BacDive-ID: 24339

DSM-Number: 27210

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, animal pathogen

description: Falsiporphyromonas endometrii 9_9A1 is an anaerobe, mesophilic animal pathogen that was isolated from bovine post-partum endometrium of a Holstein cow.

NCBI tax id

  • NCBI tax id: 1387297
  • Matching level: species

strain history

  • @ref: 21307
  • history: <- K. Wagener, Veterinärmed. Univ., Inst. Bacteriology, Mycology and Hygiene, Vienna, Austria

doi: 10.13145/bacdive24339.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Porphyromonadaceae
  • genus: Falsiporphyromonas
  • species: Falsiporphyromonas endometrii
  • full scientific name: Falsiporphyromonas endometrii Wagener et al. 2014

@ref: 21307

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Porphyromonadaceae

genus: Falsiporphyromonas

species: Falsiporphyromonas endometrii

full scientific name: Falsiporphyromonas endometrii Wagener et al. 2014

strain designation: 9_9A1

type strain: yes

Morphology

colony morphology

@refincubation period
213071-2 days
631121 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21307CHOPPED MEAT MEDIUM (DSMZ Medium 78)yeshttps://mediadive.dsmz.de/medium/78Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
21307COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
21307positivegrowth37mesophilic
63112positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
21307anaerobe
63112anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase-
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
21307----------------+--+----++-+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
21307bovine post-partum endometrium of a Holstein cowKlein Bennebek, FriedrichsanbauGermanyDEUEurope
63112Bovine uterus2010-08-21

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Urogenital tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_132220.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11822;96_51412;97_66213;98_88441;99_132220&stattab=map
  • Last taxonomy: Falsiporphyromonas endometrii subclade
  • 16S sequence: HF969314
  • Sequence Identity:
  • Total samples: 1958
  • soil counts: 78
  • aquatic counts: 195
  • animal counts: 1671
  • plant counts: 14

Safety information

risk assessment

  • @ref: 21307
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21307
  • description: Falsiporphyromonas endometrii partial 16S rRNA gene, isolate LMM 40
  • accession: HF969314
  • length: 1459
  • database: ena
  • NCBI tax ID: 1387297

GC content

  • @ref: 21307
  • GC-content: 40.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21307

culture collection no.: DSM 27210, CCUG 64267, LMM 40

straininfo link

  • @ref: 88265
  • straininfo: 406050

literature

  • topic: Phylogeny
  • Pubmed-ID: 24158948
  • title: Falsiporphyromonas endometrii gen. nov., sp. nov., isolated from the post-partum bovine uterus, and emended description of the genus Porphyromonas Shah and Collins 1988.
  • authors: Wagener K, Drillich M, Baumgardt S, Kampfer P, Busse HJ, Ehling-Schulz M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.057307-0
  • year: 2013
  • mesh: Animals, Bacterial Typing Techniques, Bacteroidaceae/*classification/genetics/isolation & purification, Base Composition, Cattle/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Female, Glycolipids/chemistry, Molecular Sequence Data, Peptidoglycan/chemistry, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, Porphyromonas/classification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/chemistry, Uterus/*microbiology, Vitamin K 2/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21307Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27210Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27210)
63112Curators of the CCUGhttps://www.ccug.se/strain?id=64267Culture Collection University of Gothenburg (CCUG) (CCUG 64267)
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88265Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406050.1