Strain identifier
BacDive ID: 24310
Type strain:
Species: Aquamicrobium segne
Strain Designation: 1006/1
Strain history: <- A. Lipski, Institut für Ernährungs- und Lebensmittelwissenschaften, Univ. Bonn, Germany; 1006/1 <- A. Ahrens
NCBI tax ID(s): 469547 (species)
General
@ref: 20309
BacDive-ID: 24310
DSM-Number: 19714
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Aquamicrobium segne 1006/1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from experimental biofilter for waste gas treatment of an animal rendering plant.
NCBI tax id
- NCBI tax id: 469547
- Matching level: species
strain history
- @ref: 20309
- history: <- A. Lipski, Institut für Ernährungs- und Lebensmittelwissenschaften, Univ. Bonn, Germany; 1006/1 <- A. Ahrens
doi: 10.13145/bacdive24310.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Aquamicrobium
- species: Aquamicrobium segne
- full scientific name: Aquamicrobium segne Lipski and Kämpfer 2012
@ref: 20309
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Aquamicrobium
species: Aquamicrobium segne
full scientific name: Aquamicrobium segne Lipski and Kämpfer 2012
strain designation: 1006/1
type strain: yes
Morphology
cell morphology
- @ref: 30532
- gram stain: negative
- cell shape: rod-shaped
pigmentation
- @ref: 30532
- production: yes
Culture and growth conditions
culture medium
- @ref: 20309
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20309 | positive | growth | 28 | mesophilic |
30532 | positive | growth | 30 | mesophilic |
60511 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 30532
- ability: positive
- type: optimum
- pH: 7.5
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
30532 | aerobe |
60511 | aerobe |
spore formation
- @ref: 30532
- spore formation: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
30532 | catalase | + | 1.11.1.6 |
30532 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
20309 | experimental biofilter for waste gas treatment of an animal rendering plant | Lower Saxony, Lingen/Brögbern | Germany | DEU | Europe | |
60511 | Biofilter for treatment of waste gases (animal) | Niedersachsen | Germany | DEU | Europe | 1990 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Bioremediation | #Biofilter |
#Engineered | #Industrial | #Plant (Factory) |
#Engineered | #Waste | #Waste gas |
Safety information
risk assessment
- @ref: 20309
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20309
- description: Aquamicrobium segne partial 16S rRNA gene, type strain 1006/1T
- accession: AM884145
- length: 1429
- database: ena
- NCBI tax ID: 469547
GC content
@ref | GC-content | method |
---|---|---|
20309 | 58.7 | high performance liquid chromatography (HPLC) |
30532 | 58.7 |
External links
@ref: 20309
culture collection no.: DSM 19714, CCUG 55250
straininfo link
- @ref: 88243
- straininfo: 402116
literature
- topic: Phylogeny
- Pubmed-ID: 22155762
- title: Aquamicrobium ahrensii sp. nov. and Aquamicrobium segne sp. nov., isolated from experimental biofilters.
- authors: Lipski A, Kampfer P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.038224-0
- year: 2011
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Filtration, Molecular Sequence Data, Nucleic Acid Hybridization, Phyllobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analysis
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
20309 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19714 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19714) | |||
30532 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26864 | 28776041 | |
60511 | Curators of the CCUG | https://www.ccug.se/strain?id=55250 | Culture Collection University of Gothenburg (CCUG) (CCUG 55250) | |||
88243 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402116.1 |