Strain identifier

BacDive ID: 24310

Type strain: Yes

Species: Aquamicrobium segne

Strain Designation: 1006/1

Strain history: <- A. Lipski, Institut für Ernährungs- und Lebensmittelwissenschaften, Univ. Bonn, Germany; 1006/1 <- A. Ahrens

NCBI tax ID(s): 469547 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 20309

BacDive-ID: 24310

DSM-Number: 19714

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Aquamicrobium segne 1006/1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from experimental biofilter for waste gas treatment of an animal rendering plant.

NCBI tax id

  • NCBI tax id: 469547
  • Matching level: species

strain history

  • @ref: 20309
  • history: <- A. Lipski, Institut für Ernährungs- und Lebensmittelwissenschaften, Univ. Bonn, Germany; 1006/1 <- A. Ahrens

doi: 10.13145/bacdive24310.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Aquamicrobium
  • species: Aquamicrobium segne
  • full scientific name: Aquamicrobium segne Lipski and Kämpfer 2012

@ref: 20309

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Aquamicrobium

species: Aquamicrobium segne

full scientific name: Aquamicrobium segne Lipski and Kämpfer 2012

strain designation: 1006/1

type strain: yes

Morphology

cell morphology

  • @ref: 30532
  • gram stain: negative
  • cell shape: rod-shaped

pigmentation

  • @ref: 30532
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20309
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20309positivegrowth28mesophilic
30532positivegrowth30mesophilic
60511positivegrowth30mesophilic

culture pH

  • @ref: 30532
  • ability: positive
  • type: optimum
  • pH: 7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30532aerobe
60511aerobe

spore formation

  • @ref: 30532
  • spore formation: no

enzymes

@refvalueactivityec
30532catalase+1.11.1.6
30532cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
20309experimental biofilter for waste gas treatment of an animal rendering plantLower Saxony, Lingen/BrögbernGermanyDEUEurope
60511Biofilter for treatment of waste gases (animal)NiedersachsenGermanyDEUEurope1990

isolation source categories

Cat1Cat2Cat3
#Engineered#Bioremediation#Biofilter
#Engineered#Industrial#Plant (Factory)
#Engineered#Waste#Waste gas

Safety information

risk assessment

  • @ref: 20309
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20309
  • description: Aquamicrobium segne partial 16S rRNA gene, type strain 1006/1T
  • accession: AM884145
  • length: 1429
  • database: ena
  • NCBI tax ID: 469547

GC content

@refGC-contentmethod
2030958.7high performance liquid chromatography (HPLC)
3053258.7

External links

@ref: 20309

culture collection no.: DSM 19714, CCUG 55250

straininfo link

  • @ref: 88243
  • straininfo: 402116

literature

  • topic: Phylogeny
  • Pubmed-ID: 22155762
  • title: Aquamicrobium ahrensii sp. nov. and Aquamicrobium segne sp. nov., isolated from experimental biofilters.
  • authors: Lipski A, Kampfer P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.038224-0
  • year: 2011
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Filtration, Molecular Sequence Data, Nucleic Acid Hybridization, Phyllobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20309Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-19714Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19714)
30532Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172686428776041
60511Curators of the CCUGhttps://www.ccug.se/strain?id=55250Culture Collection University of Gothenburg (CCUG) (CCUG 55250)
88243Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402116.1