Strain identifier

BacDive ID: 24285

Type strain: Yes

Species: Paenibacillus chartarius

Strain history: CCM 7759 <-- CCUG 55240 <-- L. Makhoul; Stora Enso, Sweden; 158-11.

NCBI tax ID(s): 747481 (species)

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General

@ref: 20709

BacDive-ID: 24285

DSM-Number: 28439

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Paenibacillus chartarius DSM 28439 is an aerobe, spore-forming, mesophilic bacterium that was isolated from industry, papermill.

NCBI tax id

  • NCBI tax id: 747481
  • Matching level: species

strain history

@refhistory
20709<- CCUG; CCUG 55240 <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany
67770CCM 7759 <-- CCUG 55240 <-- L. Makhoul; Stora Enso, Sweden; 158-11.

doi: 10.13145/bacdive24285.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus chartarius
  • full scientific name: Paenibacillus chartarius Kämpfer et al. 2012

@ref: 20709

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus chartarius

full scientific name: Paenibacillus chartarius Kämpfer et al. 2012

type strain: yes

Morphology

cell morphology

  • @ref: 30400
  • gram stain: positive
  • cell length: 2.5 µm
  • cell width: 0.9 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30400
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20709
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20709positivegrowth30mesophilic
30400positivegrowth15-45
30400positiveoptimum30mesophilic
60508positivegrowth37mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepH
30400positivegrowth5.5-7.5
30400positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30400aerobe
60508aerobe

spore formation

  • @ref: 30400
  • spore formation: yes

halophily

  • @ref: 30400
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 1-3 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3040017057cellobiose+carbon source
3040028757fructose+carbon source
3040028260galactose+carbon source
3040024265gluconate+carbon source
3040017234glucose+carbon source
3040017306maltose+carbon source
3040029864mannitol+carbon source
3040037684mannose+carbon source
3040026546rhamnose+carbon source
3040017814salicin+carbon source
3040017992sucrose+carbon source
3040027082trehalose+carbon source
3040018222xylose+carbon source

enzymes

@refvalueactivityec
30400gelatinase+
30400cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
20709industry, papermillKarlstadSwedenSWEEurope
60508Papermill,industryKarlstadSwedenSWEEurope2007-09-01
67770Industrial paper millSwedenSWEEurope

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial

taxonmaps

  • @ref: 69479
  • File name: preview.99_144568.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_55367;97_71440;98_95905;99_144568&stattab=map
  • Last taxonomy: Paenibacillus chartarius subclade
  • 16S sequence: FN689718
  • Sequence Identity:
  • Total samples: 442
  • soil counts: 362
  • aquatic counts: 38
  • animal counts: 21
  • plant counts: 21

Safety information

risk assessment

  • @ref: 20709
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20709
  • description: Paenibacillus chartarius partial 16S rRNA gene, strain CCUG 55240
  • accession: FN689718
  • length: 1407
  • database: ena
  • NCBI tax ID: 747481

GC content

  • @ref: 20709
  • GC-content: 53.9

External links

@ref: 20709

culture collection no.: DSM 28439, CCM 7759, CCUG 55240, JCM 30496

straininfo link

  • @ref: 88223
  • straininfo: 396971

literature

  • topic: Phylogeny
  • Pubmed-ID: 21828020
  • title: Paenibacillus chartarius sp. nov., isolated from a paper mill.
  • authors: Kampfer P, Falsen E, Lodders N, Martin K, Kassmannhuber J, Busse HJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.035154-0
  • year: 2011
  • mesh: DNA, Bacterial/genetics, Fatty Acids/metabolism, Industry, Molecular Sequence Data, Paenibacillus/*classification/genetics/*isolation & purification/metabolism, Paper, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20709Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28439Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28439)
30400Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172673728776041
60508Curators of the CCUGhttps://www.ccug.se/strain?id=55240Culture Collection University of Gothenburg (CCUG) (CCUG 55240)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88223Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396971.1