Strain identifier

BacDive ID: 24282

Type strain: Yes

Species: Paenibacillus chungangensis

Strain Designation: CUA 9038

Strain history: <- WY Kim, Chung-Ang Univ.

NCBI tax ID(s): 696535 (species)

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General

@ref: 20706

BacDive-ID: 24282

DSM-Number: 28440

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Paenibacillus chungangensis CUA 9038 is an aerobe, spore-forming, mesophilic bacterium that was isolated from tidal flat sediment.

NCBI tax id

  • NCBI tax id: 696535
  • Matching level: species

strain history

@refhistory
20706<- CCUG; CCUG 59129 <- W. Kim, Chung-Ang Univ., Seoul, Republic of Korea; CAU 9038
67771<- WY Kim, Chung-Ang Univ.

doi: 10.13145/bacdive24282.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus chungangensis
  • full scientific name: Paenibacillus chungangensis Park et al. 2011

@ref: 20706

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus chungangensis

full scientific name: Paenibacillus chungangensis Park et al. 2011

strain designation: CUA 9038

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29823positive1.2 µm0.3 µmrod-shapedyes
67771rod-shapedyes
67771positive

pigmentation

  • @ref: 29823
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20706
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
20706positivegrowth28mesophilic
29823positivegrowth20-45
29823positiveoptimum30mesophilic
61827positivegrowth30-37mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
29823positivegrowth5.0-11.0alkaliphile
29823positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29823aerobe
67771aerobe

spore formation

@refspore formationtype of spore
29823yes
67771yesendospore

halophily

@refsaltgrowthtested relationconcentration
29823NaClpositivegrowth0-15 %
29823NaClpositiveoptimum3 %

observation

@refobservation
29823aggregates in clumps
67771quinones: MK-7

metabolite utilization

  • @ref: 29823
  • Chebi-ID: 17632
  • metabolite: nitrate
  • utilization activity: +
  • kind of utilization tested: reduction

enzymes

@refvalueactivityec
29823catalase+1.11.1.6
29823cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
20706tidal flat sedimentDaeYiJac IslandRepublic of KoreaKORAsia
61827Tidal flat sedimentDaeYiJac IslandRepublic of KoreaKORAsia2009-04-19
67771Fromtidal-flat sediment of DaeYiJac IslandRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Tidal flat
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_94702.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_38859;97_49492;98_65059;99_94702&stattab=map
  • Last taxonomy: Paenibacillus chungangensis subclade
  • 16S sequence: GU187432
  • Sequence Identity:
  • Total samples: 16
  • soil counts: 15
  • aquatic counts: 1

Safety information

risk assessment

  • @ref: 20706
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20706
  • description: Paenibacillus chungangensis strain CAU 9038 16S ribosomal RNA gene, partial sequence
  • accession: GU187432
  • length: 1469
  • database: ena
  • NCBI tax ID: 696535

GC content

  • @ref: 20706
  • GC-content: 51.6

External links

@ref: 20706

culture collection no.: DSM 28440, CCUG 59129, KCTC 13717, CAU 9038

straininfo link

  • @ref: 88220
  • straininfo: 407576

literature

  • topic: Phylogeny
  • Pubmed-ID: 20228214
  • title: Paenibacillus chungangensis sp. nov., isolated from a tidal-flat sediment.
  • authors: Park MH, Traiwan J, Jung MY, Nam YS, Jeong JH, Kim W
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.021832-0
  • year: 2010
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Geologic Sediments/microbiology, Lipids/analysis, Molecular Sequence Data, Paenibacillus/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20706Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28440Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28440)
29823Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172619928776041
61827Curators of the CCUGhttps://www.ccug.se/strain?id=59129Culture Collection University of Gothenburg (CCUG) (CCUG 59129)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88220Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407576.1