Strain identifier
BacDive ID: 24260
Type strain:
Species: Litoribacillus peritrichatus
Strain Designation: JYr12
Strain history: X.-H. Zhang JYr12 <-- R. Zhao.
NCBI tax ID(s): 718191 (species)
General
@ref: 21299
BacDive-ID: 24260
DSM-Number: 23811
keywords: 16S sequence, Bacteria, mesophilic
description: Litoribacillus peritrichatus JYr12 is a mesophilic bacterium that was isolated from coastal sediment from an amphioxus breeding zone.
NCBI tax id
- NCBI tax id: 718191
- Matching level: species
strain history
@ref | history |
---|---|
21299 | <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; JYr12 <- R. Zhao |
67770 | X.-H. Zhang JYr12 <-- R. Zhao. |
doi: 10.13145/bacdive24260.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Oceanospirillaceae
- genus: Litoribacillus
- species: Litoribacillus peritrichatus
- full scientific name: Litoribacillus peritrichatus Zhao et al. 2014
@ref: 21299
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Oceanospirillaceae
genus: Litoribacillus
species: Litoribacillus peritrichatus
full scientific name: Litoribacillus peritrichatus Zhao et al. 2014
strain designation: JYr12
type strain: yes
Morphology
colony morphology
- @ref: 21299
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 21299
- name: R2A MEDIUM WITH SEAWATER 75% (DSMZ Medium 1351)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1351
- composition: Name: R2A MEDIUM WITH SEAWATER (DSMZ Medium 1351) Composition: Agar 20.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Sea water Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21299 | positive | growth | 25 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
21299 | coastal sediment from an amphioxus breeding zone | Yellow Sea (36° 5' N, 120° 32'), Qingdao | China | CHN | Asia | 36.0969 | 120.537 |
67770 | Amphioxus farm in coastal waters in Qingdao | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Sediment
taxonmaps
- @ref: 69479
- File name: preview.99_99281.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_235;96_40353;97_51498;98_67922;99_99281&stattab=map
- Last taxonomy: Litoribacillus peritrichatus subclade
- 16S sequence: GU391221
- Sequence Identity:
- Total samples: 935
- soil counts: 13
- aquatic counts: 745
- animal counts: 175
- plant counts: 2
Safety information
risk assessment
- @ref: 21299
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21299
- description: Litoribacillus peritrichatus strain JYr12 16S ribosomal RNA gene, partial sequence
- accession: GU391221
- length: 1519
- database: ena
- NCBI tax ID: 718191
GC content
- @ref: 21299
- GC-content: 42.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21299
culture collection no.: DSM 23811, CGMCC 1.10796, JCM 17551
straininfo link
- @ref: 88202
- straininfo: 370747
literature
- topic: Phylogeny
- Pubmed-ID: 22990873
- title: Litoribacillus peritrichatus gen. nov. sp. nov., isolated from coastal sediment of an amphioxus breeding zone in Qingdao, China.
- authors: Zhao R, Ji S, Wang Y, Yu T, Li Z, Li B, Shi X, Zhang XH
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-012-9815-y
- year: 2012
- mesh: Aerobiosis, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/physiology, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Oceanospirillaceae/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Ubiquinone/analysis
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21299 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23811 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23811) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88202 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID370747.1 |