Strain identifier

BacDive ID: 24260

Type strain: Yes

Species: Litoribacillus peritrichatus

Strain Designation: JYr12

Strain history: X.-H. Zhang JYr12 <-- R. Zhao.

NCBI tax ID(s): 718191 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21299

BacDive-ID: 24260

DSM-Number: 23811

keywords: 16S sequence, Bacteria, mesophilic

description: Litoribacillus peritrichatus JYr12 is a mesophilic bacterium that was isolated from coastal sediment from an amphioxus breeding zone.

NCBI tax id

  • NCBI tax id: 718191
  • Matching level: species

strain history

@refhistory
21299<- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; JYr12 <- R. Zhao
67770X.-H. Zhang JYr12 <-- R. Zhao.

doi: 10.13145/bacdive24260.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Litoribacillus
  • species: Litoribacillus peritrichatus
  • full scientific name: Litoribacillus peritrichatus Zhao et al. 2014

@ref: 21299

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Litoribacillus

species: Litoribacillus peritrichatus

full scientific name: Litoribacillus peritrichatus Zhao et al. 2014

strain designation: JYr12

type strain: yes

Morphology

colony morphology

  • @ref: 21299
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 21299
  • name: R2A MEDIUM WITH SEAWATER 75% (DSMZ Medium 1351)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1351
  • composition: Name: R2A MEDIUM WITH SEAWATER (DSMZ Medium 1351) Composition: Agar 20.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Sea water Distilled water

culture temp

@refgrowthtypetemperaturerange
21299positivegrowth25mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
21299coastal sediment from an amphioxus breeding zoneYellow Sea (36° 5' N, 120° 32'), QingdaoChinaCHNAsia36.0969120.537
67770Amphioxus farm in coastal waters in QingdaoChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_99281.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_235;96_40353;97_51498;98_67922;99_99281&stattab=map
  • Last taxonomy: Litoribacillus peritrichatus subclade
  • 16S sequence: GU391221
  • Sequence Identity:
  • Total samples: 935
  • soil counts: 13
  • aquatic counts: 745
  • animal counts: 175
  • plant counts: 2

Safety information

risk assessment

  • @ref: 21299
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21299
  • description: Litoribacillus peritrichatus strain JYr12 16S ribosomal RNA gene, partial sequence
  • accession: GU391221
  • length: 1519
  • database: ena
  • NCBI tax ID: 718191

GC content

  • @ref: 21299
  • GC-content: 42.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21299

culture collection no.: DSM 23811, CGMCC 1.10796, JCM 17551

straininfo link

  • @ref: 88202
  • straininfo: 370747

literature

  • topic: Phylogeny
  • Pubmed-ID: 22990873
  • title: Litoribacillus peritrichatus gen. nov. sp. nov., isolated from coastal sediment of an amphioxus breeding zone in Qingdao, China.
  • authors: Zhao R, Ji S, Wang Y, Yu T, Li Z, Li B, Shi X, Zhang XH
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-012-9815-y
  • year: 2012
  • mesh: Aerobiosis, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/physiology, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Oceanospirillaceae/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Ubiquinone/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21299Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-23811Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23811)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88202Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID370747.1