Strain identifier

BacDive ID: 24254

Type strain: Yes

Species: Nocardioides zeae

Strain Designation: JM-1068

Culture col. no.: DSM 28163, CIP 110696, LMG 28079

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20687

BacDive-ID: 24254

DSM-Number: 28163

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Nocardioides zeae JM-1068 is a mesophilic bacterium that was isolated from internal stem tissue of field grown healthy corn, Zea mays cultivar 'Sweet Belle'.

strain history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; JM-1068 <- J. Mcinroy

doi: 10.13145/bacdive24254.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Propionibacteriales
  • family: Nocardioidaceae
  • genus: Nocardioides
  • species: Nocardioides zeae
  • full scientific name: Nocardioides zeae Glaeser et al. 2014

@ref: 20687

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Nocardioides

species: Nocardioides zeae

full scientific name: Nocardioides zeae Glaeser et al. 2014

strain designation: JM-1068

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36247MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
20687R2A MEDIUM (DSMZ Medium 830)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf

culture temp

@refgrowthtypetemperaturerange
20687positivegrowth28mesophilic
36247positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 20687
  • sample type: internal stem tissue of field grown healthy corn, Zea mays cultivar 'Sweet Belle'
  • host species: Zea mays
  • geographic location: E.V. Smith Research Center, Alabama, Tallassee
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Stem (Branch)

Safety information

risk assessment

  • @ref: 20687
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20687
  • description: Nocardioides zeae strain JM-1068 16S ribosomal RNA gene, partial sequence
  • accession: KF900163
  • length: 1438
  • database: ena
  • NCBI tax ID: 1457234

Genome sequences

  • @ref: 66792
  • description: Nocardioides zeae JCM 30728
  • accession: GCA_010686755
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 1457234

External links

@ref: 20687

culture collection no.: DSM 28163, CIP 110696, LMG 28079

straininfo link

@refpassport
20218http://www.straininfo.net/strains/896911
20218http://www.straininfo.net/strains/892183

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
20687Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28163Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28163)
36247Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30503
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes