Strain identifier
BacDive ID: 24241
Type strain:
Species: Nocardia kroppenstedtii
Strain Designation: N1286
Strain history: <- A. Jones, Northumbria University, Newcastle Upon Tyne, United Kingdom; N1286
NCBI tax ID(s): 341199 (species)
General
@ref: 20679
BacDive-ID: 24241
DSM-Number: 45810
keywords: 16S sequence, Bacteria, mesophilic
description: Nocardia kroppenstedtii N1286 is a mesophilic bacterium that was isolated from bronchial lavage from a lung transplant patient with a pulmonary infection.
NCBI tax id
- NCBI tax id: 341199
- Matching level: species
strain history
- @ref: 20679
- history: <- A. Jones, Northumbria University, Newcastle Upon Tyne, United Kingdom; N1286
doi: 10.13145/bacdive24241.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia kroppenstedtii
- full scientific name: Nocardia kroppenstedtii Jones et al. 2014
@ref: 20679
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Nocardia
species: Nocardia kroppenstedtii
full scientific name: Nocardia kroppenstedtii Jones et al. 2014
strain designation: N1286
type strain: yes
Morphology
colony morphology
@ref | colony color | medium used |
---|---|---|
69443 | Beige (1001) | ISP 2 |
69443 | Beige (1001) | ISP 6 |
69443 | Light ivory (1014) | ISP 4 |
69443 | Light ivory (1015) | suter with tyrosine |
69443 | Light ivory (1015) | suter without tyrosine |
69443 | Oyster white (1013) | ISP 3 |
69443 | Oyster white (1013) | ISP 5 |
69443 | Oyster white (1013) | ISP 7 |
multicellular morphology
@ref | forms multicellular complex | complex name | medium name |
---|---|---|---|
69443 | no | Aerial mycelium | ISP 2 |
69443 | no | Aerial mycelium | ISP 3 |
69443 | no | Aerial mycelium | ISP 4 |
69443 | no | Aerial mycelium | ISP 5 |
69443 | no | Aerial mycelium | ISP 6 |
69443 | no | Aerial mycelium | ISP 7 |
69443 | no | Aerial mycelium | suter with tyrosine |
69443 | no | Aerial mycelium | suter without tyrosine |
pigmentation
@ref | production | name |
---|---|---|
69443 | no | Melanin |
69443 | no | soluble pigment |
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
20679 | https://www.dsmz.de/microorganisms/photos/DSM_45810.jpg | Medium 535 28°C | © Leibniz-Institut DSMZ |
69443 | DSM_45810_image3.jpeg | Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
69443 | DSM_45810_image4.jpeg | Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
Culture and growth conditions
culture medium
- @ref: 20679
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 20679
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
halophily
- @ref: 69443
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
69443 | 22599 | arabinose | - | growth |
69443 | 62968 | cellulose | +/- | growth |
69443 | 28757 | fructose | + | growth |
69443 | 17234 | glucose | + | growth |
69443 | 17268 | inositol | - | growth |
69443 | 37684 | mannose | - | growth |
69443 | 16634 | raffinose | - | growth |
69443 | 26546 | rhamnose | + | growth |
69443 | 17992 | sucrose | - | growth |
69443 | 18222 | xylose | - | growth |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | + | 3.5.1.B15 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69443 | - | + | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69443 | - | - | - | +/- | + | + | + | +/- | - | + | + | - | +/- | - | + | + | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 20679
- sample type: bronchial lavage from a lung transplant patient with a pulmonary infection
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | |
#Host Body-Site | #Oral cavity and airways | |
#Host Body Product | #Oral cavity and Airways | #Bronchial wash |
taxonmaps
- @ref: 69479
- File name: preview.99_1854.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_243;97_280;98_506;99_1854&stattab=map
- Last taxonomy: Nocardia
- 16S sequence: DQ157924
- Sequence Identity:
- Total samples: 1055
- soil counts: 406
- aquatic counts: 189
- animal counts: 365
- plant counts: 95
Safety information
risk assessment
- @ref: 20679
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20679
- description: Nocardia kroppenstedtii strain N1286 16S ribosomal RNA gene, partial sequence
- accession: DQ157924
- length: 1544
- database: ena
- NCBI tax ID: 341199
External links
@ref: 20679
culture collection no.: DSM 45810, NCTC 13617
straininfo link
- @ref: 88184
- straininfo: 405740
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24198056 | Nocardia kroppenstedtii sp. nov., an actinomycete isolated from a lung transplant patient with a pulmonary infection. | Jones AL, Fisher AJ, Mahida R, Gould K, Perry JD, Hannan MM, Judge EP, Brown R, Boagey K, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.048330-0 | 2013 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Humans, Lung Diseases/*microbiology, Lung Transplantation, Molecular Sequence Data, Nocardia/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Pathogenicity |
Metabolism | 31552514 | Nocardia panacis sp. nov., a novel actinomycete with antiphytopathogen activity isolated from the rhizosphere of Panax notoginseng. | Hu JY, Li L, Peng G, Li YQ, Xu LH, Guan HL, Zhao LX, Miao CP | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01326-z | 2019 | Actinobacteria/*drug effects, Base Composition/genetics/physiology, Cardiolipins/metabolism, DNA, Bacterial/metabolism, Nocardia, Panax notoginseng/*chemistry, Phosphatidylethanolamines/metabolism, Phosphatidylinositols/metabolism, Phylogeny, Plant Extracts/chemistry/*pharmacology, RNA, Ribosomal, 16S/metabolism, *Rhizosphere, Soil Microbiology, Vitamin K 2/metabolism | Phylogeny |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20679 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45810 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45810) | |
68379 | Automatically annotated from API Coryne | |||
68382 | Automatically annotated from API zym | |||
69443 | Wink, J. | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | https://cdn.dsmz.de/wink/DSM%2045810.pdf | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88184 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405740.1 |