Strain identifier

BacDive ID: 24241

Type strain: Yes

Species: Nocardia kroppenstedtii

Strain Designation: N1286

Strain history: <- A. Jones, Northumbria University, Newcastle Upon Tyne, United Kingdom; N1286

NCBI tax ID(s): 341199 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20679

BacDive-ID: 24241

DSM-Number: 45810

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardia kroppenstedtii N1286 is a mesophilic bacterium that was isolated from bronchial lavage from a lung transplant patient with a pulmonary infection.

NCBI tax id

  • NCBI tax id: 341199
  • Matching level: species

strain history

  • @ref: 20679
  • history: <- A. Jones, Northumbria University, Newcastle Upon Tyne, United Kingdom; N1286

doi: 10.13145/bacdive24241.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia kroppenstedtii
  • full scientific name: Nocardia kroppenstedtii Jones et al. 2014

@ref: 20679

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Nocardia

species: Nocardia kroppenstedtii

full scientific name: Nocardia kroppenstedtii Jones et al. 2014

strain designation: N1286

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69443Beige (1001)ISP 2
69443Beige (1001)ISP 6
69443Light ivory (1014)ISP 4
69443Light ivory (1015)suter with tyrosine
69443Light ivory (1015)suter without tyrosine
69443Oyster white (1013)ISP 3
69443Oyster white (1013)ISP 5
69443Oyster white (1013)ISP 7

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69443noAerial myceliumISP 2
69443noAerial myceliumISP 3
69443noAerial myceliumISP 4
69443noAerial myceliumISP 5
69443noAerial myceliumISP 6
69443noAerial myceliumISP 7
69443noAerial myceliumsuter with tyrosine
69443noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
69443noMelanin
69443nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
20679https://www.dsmz.de/microorganisms/photos/DSM_45810.jpgMedium 535 28°C© Leibniz-Institut DSMZ
69443DSM_45810_image3.jpegPlates (535, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69443DSM_45810_image4.jpegPlates (535, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 20679
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 20679
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

halophily

  • @ref: 69443
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6944322599arabinose-growth
6944362968cellulose+/-growth
6944328757fructose+growth
6944317234glucose+growth
6944317268inositol-growth
6944337684mannose-growth
6944316634raffinose-growth
6944326546rhamnose+growth
6944317992sucrose-growth
6944318222xylose-growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69443-+++---------------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69443---+/-++++/--++-+/--++---

Isolation, sampling and environmental information

isolation

  • @ref: 20679
  • sample type: bronchial lavage from a lung transplant patient with a pulmonary infection
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host Body-Site#Oral cavity and airways
#Host Body Product#Oral cavity and Airways#Bronchial wash

taxonmaps

  • @ref: 69479
  • File name: preview.99_1854.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_243;97_280;98_506;99_1854&stattab=map
  • Last taxonomy: Nocardia
  • 16S sequence: DQ157924
  • Sequence Identity:
  • Total samples: 1055
  • soil counts: 406
  • aquatic counts: 189
  • animal counts: 365
  • plant counts: 95

Safety information

risk assessment

  • @ref: 20679
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20679
  • description: Nocardia kroppenstedtii strain N1286 16S ribosomal RNA gene, partial sequence
  • accession: DQ157924
  • length: 1544
  • database: ena
  • NCBI tax ID: 341199

External links

@ref: 20679

culture collection no.: DSM 45810, NCTC 13617

straininfo link

  • @ref: 88184
  • straininfo: 405740

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24198056Nocardia kroppenstedtii sp. nov., an actinomycete isolated from a lung transplant patient with a pulmonary infection.Jones AL, Fisher AJ, Mahida R, Gould K, Perry JD, Hannan MM, Judge EP, Brown R, Boagey K, Goodfellow MInt J Syst Evol Microbiol10.1099/ijs.0.048330-02013Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Humans, Lung Diseases/*microbiology, Lung Transplantation, Molecular Sequence Data, Nocardia/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryPathogenicity
Metabolism31552514Nocardia panacis sp. nov., a novel actinomycete with antiphytopathogen activity isolated from the rhizosphere of Panax notoginseng.Hu JY, Li L, Peng G, Li YQ, Xu LH, Guan HL, Zhao LX, Miao CPAntonie Van Leeuwenhoek10.1007/s10482-019-01326-z2019Actinobacteria/*drug effects, Base Composition/genetics/physiology, Cardiolipins/metabolism, DNA, Bacterial/metabolism, Nocardia, Panax notoginseng/*chemistry, Phosphatidylethanolamines/metabolism, Phosphatidylinositols/metabolism, Phylogeny, Plant Extracts/chemistry/*pharmacology, RNA, Ribosomal, 16S/metabolism, *Rhizosphere, Soil Microbiology, Vitamin K 2/metabolismPhylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20679Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45810Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45810)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69443Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%2045810.pdf
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88184Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405740.1