Archive BacDiveID:10.13145/bacdive24239.20230509.8.1

Strain identifier

BacDive ID: 24239

Type strain:

Species: Mycoplasma feriruminatoris

Strain Designation: DL 321/93, G5847

Strain history: <- M. Heller, Friedrich-Loeffler-Institut, Jena, Germany; G5847 <- H. Pfützner, Friedrich-Loeffler-Institut, Jena, Germany <- P. Hummel

NCBI tax ID(s): 1179777 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 21089

BacDive-ID: 24239

DSM-Number: 26019

keywords: genome sequence, Bacteria, mesophilic

description: Mycoplasma feriruminatoris DL 321/93 is a mesophilic bacterium that was isolated from joint fluid of an Alpine ibex .

NCBI tax id

NCBI tax id: 1179777
Matching level: species

strain history

@ref: 21089
history: <- M. Heller, Friedrich-Loeffler-Institut, Jena, Germany; G5847 <- H. Pfützner, Friedrich-Loeffler-Institut, Jena, Germany <- P. Hummel

doi: 10.13145/bacdive24239.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/mycoplasmatota
domain: Bacteria
phylum: Mycoplasmatota
class: Mollicutes
order: Mycoplasmatales
family: Mycoplasmataceae
genus: Mycoplasma
species: Mycoplasma feriruminatoris
full scientific name: Mycoplasma feriruminatoris Jores et al. 2015

@ref: 21089

domain: Bacteria

phylum: Tenericutes

class: Mollicutes

order: Mycoplasmatales

family: Mycoplasmataceae

genus: Mycoplasma

species: Mycoplasma feriruminatoris

full scientific name: Mycoplasma feriruminatoris Jores et al. 2015

strain designation: DL 321/93, G5847

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	no	92.857
69480		99.512	positive

colony morphology

@ref: 21089
incubation period: 1-2 days

Culture and growth conditions

culture medium

@ref: 21089
name: SP4-Z MEDIUM (DSMZ Medium 1076b)
growth: yes
link: https://mediadive.dsmz.de/medium/1076b
composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water

culture temp

@ref: 21089
growth: positive
type: growth
temperature: 37
range: mesophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69481	no	100
69480	no	99.999

Isolation, sampling and environmental information

isolation

@ref: 21089
sample type: joint fluid of an Alpine ibex (Capra ibex)
host species: Capra ibex
geographic location: Berlin Zoo
country: Germany
origin.country: DEU
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Limb	#Joint
#Host Body Product	#Fluids

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Mycoplasma feriruminatoris G5847	GCA_000327395	complete	ncbi	1179777
66792	Mycoplasma feriruminatoris G5847	2531839521	draft	img	1179777

GC content

@ref: 21089
GC-content: 24.1
method: sequence analysis

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
motile	no	93.51	no
motile	no	93.51	no
flagellated	no	98.059	no
flagellated	no	98.059	no
gram-positive	yes	74.014	no
gram-positive	yes	74.014	no
anaerobic	no	95.84	no
anaerobic	no	95.84	no
aerobic	no	96.805	no
aerobic	no	96.805	no
halophile	yes	52.14	no
halophile	yes	52.14	no
spore-forming	no	98.582	no
spore-forming	no	98.582	no
thermophile	no	94.112	yes
thermophile	no	94.112	yes
glucose-util	yes	90.708	no
glucose-util	yes	90.708	no
glucose-ferment	yes	84.229	no
glucose-ferment	yes	84.229	no

External links

@ref: 21089

culture collection no.: DSM 26019, NCTC 13622

straininfo link

@ref: 88182
straininfo: 396652

literature

topic: Phylogeny
Pubmed-ID: 24016869
title: Mycoplasma feriruminatoris sp. nov., a fast growing Mycoplasma species isolated from wild Caprinae.
authors: Jores J, Fischer A, Sirand-Pugnet P, Thomann A, Liebler-Tenorio EM, Schnee C, Santana-Cruz I, Heller M, Frey J
journal: Syst Appl Microbiol
DOI: 10.1016/j.syapm.2013.07.005
year: 2013
mesh: Animals, Animals, Wild, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genome, Bacterial, Goats/*microbiology, Molecular Sequence Data, Multilocus Sequence Typing, Mycoplasma/chemistry/*classification/genetics/growth & development/*isolation & purification, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
topic2: Genetics

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
21089	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-26019	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26019)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch	Predictions based on the model GenomeNet Sporulation v. 1	10.21203/rs.3.rs-2527258/v1
88182	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID396652.1