Strain identifier

BacDive ID: 24232

Type strain: Yes

Species: Mycobacterium lentiflavum

Strain Designation: 2186/92

Strain history: CIP <- 1998, DSMZ <- Prof. Haase, Inst. Med. Mikrobiol., Aachen, Germany: strain 2186/92

NCBI tax ID(s): 141349 (species)

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General

@ref: 20667

BacDive-ID: 24232

DSM-Number: 46733

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, rod-shaped

description: Mycobacterium lentiflavum 2186/92 is a mesophilic, rod-shaped bacterium that was isolated from human biopsy from vertebrae, spondylodiscitis.

NCBI tax id

  • NCBI tax id: 141349
  • Matching level: species

strain history

@refhistory
20667<- CIP; CIP 105465
67770CCUG 42422 <-- M. B. Coyle 2186/92 <-- E. C. Böttger.
120581CIP <- 1998, DSMZ <- Prof. Haase, Inst. Med. Mikrobiol., Aachen, Germany: strain 2186/92

doi: 10.13145/bacdive24232.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium lentiflavum
  • full scientific name: Mycobacterium lentiflavum Springer et al. 1996

@ref: 20667

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium lentiflavum

full scientific name: Mycobacterium lentiflavum Springer et al. 1996

strain designation: 2186/92

type strain: yes

Morphology

cell morphology

  • @ref: 120581
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20667MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
120581CIP Medium 55yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55

culture temp

@refgrowthtypetemperaturerange
20667positivegrowth37mesophilic
67770positivegrowth37mesophilic
120581positivegrowth22-37
120581nogrowth10psychrophilic
120581nogrowth45thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
120581606565hippurate-hydrolysis
12058117632nitrate-reduction
12058116301nitrite-reduction

metabolite production

  • @ref: 120581
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
120581oxidase-
120581beta-galactosidase-3.2.1.23
120581gelatinase-
120581catalase-1.11.1.6
120581gamma-glutamyltransferase-2.3.2.2
120581urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120581--++-+----++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20667human biopsy from vertebrae, spondylodiscitisHannover, Medical School (MHH)GermanyDEUEurope
67770Patient with spondylodiscitis
120581Human, Spondylodiscitis

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Infection#Patient#Biopsy
#Host#Human

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
206672Risk group (German classification)
1205811Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium lentiflavum 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF317658413ena141349
20218Mycobacterium lentiflavum 16S ribosomal RNA gene, partial sequenceAF4805831452ena141349
67770Mycobacterium sp. 16S rRNA geneX807691421ena1785

Genome sequences

  • @ref: 66792
  • description: Mycobacterium lentiflavum ATCC 51985
  • accession: GCA_022374895
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 141349

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.681no
flagellatedno98.681no
gram-positiveyes90.084no
gram-positiveyes90.084no
anaerobicno99.121no
anaerobicno99.121no
aerobicyes92.126no
aerobicyes92.126no
halophileno94.379no
halophileno94.379no
spore-formingno86.294no
spore-formingno86.294no
motileno93.937no
motileno93.937no
glucose-fermentno92.026no
glucose-fermentno92.026no
thermophileno97.287yes
thermophileno97.287yes
glucose-utilyes67.198no
glucose-utilyes67.198no

External links

@ref: 20667

culture collection no.: DSM 46733, ATCC 51985, CCUG 42422, CIP 105465, JCM 13390, CCUG 42559, DSM 44418

straininfo link

  • @ref: 88176
  • straininfo: 45334

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
20667Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46733Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46733)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
88176Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID45334.1
120581Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105465Collection of Institut Pasteur (CIP 105465)