Strain identifier

BacDive ID: 24213

Type strain: Yes

Species: Micromonospora kangleipakensis

Strain history: S.-K. Tang and S. Nimaichand MBRL 34.

NCBI tax ID(s): 1077942 (species)

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General

@ref: 20659

BacDive-ID: 24213

DSM-Number: 45612

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Micromonospora kangleipakensis DSM 45612 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from limestone quarry.

NCBI tax id

  • NCBI tax id: 1077942
  • Matching level: species

strain history

@refhistory
20659<- S.-K. Tang, YIM; MBRL 34T <- S. Nimaichand
67770S.-K. Tang and S. Nimaichand MBRL 34.

doi: 10.13145/bacdive24213.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora kangleipakensis
  • full scientific name: Micromonospora kangleipakensis Nimaichand et al. 2013

@ref: 20659

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora kangleipakensis

full scientific name: Micromonospora kangleipakensis Nimaichand et al. 2013

type strain: yes

Morphology

cell morphology

@refgram staincell widthconfidence
31123positive0.87 µm
69480positive100

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31123positivegrowth15-37
31123positiveoptimum28mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepH
31123positivegrowth05-07
31123positiveoptimum6

Physiology and metabolism

oxygen tolerance

  • @ref: 31123
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31123yes
69481yes100
69480yes100

observation

  • @ref: 67770
  • observation: quinones: MK-10(H6), MK-10(H2) MK-11(H4), MK-10(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3112316449alanine+carbon source
3112329987glutamate+carbon source
3112325017leucine+carbon source
3112337684mannose+carbon source
3112317822serine+carbon source

enzymes

  • @ref: 31123
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
20659limestone quarryHungpung, Manipur (25.05 °N, 94.33 °E)IndiaINDAsia25.0594.33
67770Limestone quarry at HundungManipurIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Geologic
#Engineered#Other#Mine

Safety information

risk assessment

  • @ref: 20659
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20659
  • description: Micromonospora kangleipakensis strain MBRL 34 16S ribosomal RNA gene, partial sequence
  • accession: JN560152
  • length: 1433
  • database: ena
  • NCBI tax ID: 1077942

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Micromonospora kangleipakensis strain DSM 456121077942.3wgspatric1077942
66792Micromonospora kangleipakensis DSM 456122806310638draftimg1077942
67770Micromonospora kangleipakensis DSM 45612GCA_004217615contigncbi1077942

GC content

@refGC-contentmethod
2065973.5high performance liquid chromatography (HPLC)
3112373.5
6777073.46high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno92.69no
flagellatedno97.921no
gram-positiveyes92.289yes
anaerobicno99.451yes
aerobicyes96.672yes
halophileno94.763no
spore-formingyes91.494no
thermophileno98.535yes
glucose-utilyes87.766no
glucose-fermentno93.543no

External links

@ref: 20659

culture collection no.: DSM 45612, JCM 17696, MBRL 34

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23907218Micromonospora kangleipakensis sp. nov., isolated from a sample of limestone quarry.Nimaichand S, Zhang YG, Cheng J, Li L, Zhang DF, Zhou EM, Dong L, Ningthoujam DS, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.052746-02013Bacterial Typing Techniques, Base Composition, *Calcium Carbonate, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Micromonospora/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryGenetics
Phylogeny26800665Micromonospora soli sp. nov., isolated from rice rhizosphere soil.Thawai C, Kittiwongwattana C, Thanaboripat D, Laosinwattana C, Koohakan P, Parinthawong NAntonie Van Leeuwenhoek10.1007/s10482-016-0651-32016Bacterial Typing Techniques, Base Composition, DNA Gyrase/*genetics, Micromonospora/chemistry/*classification/genetics/isolation & purification, Oryza, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20659Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45612Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45612)
31123Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172745228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1