Archive BacDiveID:10.13145/bacdive24212.20230509.8.1

Strain identifier

BacDive ID: 24212

Type strain:

Species: Micromonospora schwarzwaldensis

Strain history: CIP <- 2012, K. Martin, Hans Knöll Inst., Jena, Germany: strain HKI0641

NCBI tax ID(s): 1296375 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 20658

BacDive-ID: 24212

DSM-Number: 45708

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Micromonospora schwarzwaldensis DSM 45708 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil from flooding zone.

NCBI tax id

NCBI tax id: 1296375
Matching level: species

strain history

@ref	history
36421	2012, K. Martin, HKI Hans Knöll Inst., Jena, Germany: strain HKI0641
20658	<- K. Martin, HKI; HKI 0641
67770	CIP 110415 <-- K. Martin; Hans-Knöll-Inst., Germany; HKI0641.
122516	CIP <- 2012, K. Martin, Hans Knöll Inst., Jena, Germany: strain HKI0641

doi: 10.13145/bacdive24212.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micromonosporales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora schwarzwaldensis
full scientific name: Micromonospora schwarzwaldensis Vela Gurovic et al. 2013

@ref: 20658

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora schwarzwaldensis

full scientific name: Micromonospora schwarzwaldensis Vela Gurovic et al. 2013

type strain: yes

Morphology

cell morphology

@ref	gram stain	cell shape	motility
31084	positive
122516	positive	rod-shaped	no

pigmentation

@ref: 31084
production: yes

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
20658	GPHF-MEDIUM (DSMZ Medium 553)	yes	https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf
20658	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	yes	https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
36421	MEDIUM 72- for trypto casein soja agar	yes		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
20658	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20658	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	yes	https://mediadive.dsmz.de/medium/554	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
122516	CIP Medium 72	yes	https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@ref	growth	type	temperature	range
20658	positive	growth	28	mesophilic
31084	positive	growth	20-37
31084	positive	optimum	28	mesophilic
36421	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic

culture pH

@ref: 31084
ability: positive
type: growth
pH: 06-09
PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

@ref: 31084
oxygen tolerance: aerobe

spore formation

@ref: 31084
spore formation: yes

halophily

@ref: 31084
salt: NaCl
growth: positive
tested relation: growth
concentration: 0-4 %

observation

@ref: 67770
observation: quinones: MK-10(H₄), MK-10(H₂), MK-10

metabolite utilization

@ref	Chebi-ID	metabolite	utilization activity	kind of utilization tested
31084	17057	cellobiose	+	carbon source
31084	17716	lactose	+	carbon source
31084	17306	maltose	+	carbon source
31084	17814	salicin	+	carbon source

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
20658	soil from flooding zone	Black Forest, near Schwarzenbach dam	Germany	DEU	Europe
67770	Soil in the Black Forest		Germany	DEU	Europe
122516	Environment, Soil from flood zone	Black forest	Germany	DEU	Europe

isolation source categories

Cat1: #Environmental
Cat2: #Terrestrial
Cat3: #Soil

Safety information

risk assessment

@ref	biosafety level	biosafety level comment
20658	1	Risk group (German classification)
122516	1	Risk group (French classification)

Sequence information

16S sequences

@ref: 20658
description: Micromonospora schwarzwaldensis strain HKI0641 16S ribosomal RNA gene, partial sequence
accession: KC517406
length: 1460
database: ena
NCBI tax ID: 1296375

External links

@ref: 20658

culture collection no.: DSM 45708, CIP 110415, HKI 0641, JCM 30722

straininfo link

@ref: 88157
straininfo: 390934

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	23667141	Micromonospora schwarzwaldensis sp. nov., a producer of telomycin, isolated from soil.	Gurovic MSV, Muller S, Domin N, Seccareccia I, Nietzsche S, Martin K, Nett M	Int J Syst Evol Microbiol	10.1099/ijs.0.051623-0	2013	DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Germany, Micromonospora/classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptides/metabolism, Peptidoglycan/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analysis	Genetics
Phylogeny	26942919	Micromonospora mangrovi sp. nov., isolated from mangrove soil.	Xie QY, Ren J, Li L, Li Y, Deng ZX, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-015-0641-x	2016	Base Composition, Base Sequence, China, DNA, Bacterial/genetics, Micromonospora/classification/genetics/isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology, *Wetlands	Transcriptome

Reference

@id	authors	title	doi/url	catalogue	ID_cross_reference	pubmed
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
20658	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-45708	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45708)
31084	Barberan A, Caceres Velazquez H, Jones S, Fierer N.	Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information	10.1128/mSphere.00237-17		27413	28776041
36421	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/8272
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
88157	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID390934.1
122516	Curators of the CIP		https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110415	Collection of Institut Pasteur (CIP 110415)