Strain identifier
BacDive ID: 24206
Type strain:
Species: Rothia endophytica
Strain history: S.-K. Tang YIM 67072.
NCBI tax ID(s): 1324766 (species)
General
@ref: 20785
BacDive-ID: 24206
DSM-Number: 26247
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, ovoid-shaped
description: Rothia endophytica DSM 26247 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from surface-sterilized healthy root of Dysophylla stellata Benth..
NCBI tax id
- NCBI tax id: 1324766
- Matching level: species
strain history
@ref | history |
---|---|
20785 | <- S.-K. Tang, YIM; YIM 67072 <- Z. Xiong |
67770 | S.-K. Tang YIM 67072. |
doi: 10.13145/bacdive24206.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Rothia
- species: Rothia endophytica
- full scientific name: Rothia endophytica Xiong et al. 2013
@ref: 20785
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Rothia
species: Rothia endophytica
full scientific name: Rothia endophytica Xiong et al. 2013
type strain: yes
Morphology
cell morphology
- @ref: 31116
- gram stain: positive
- cell length: 1 µm
- cell width: 0.75 µm
- cell shape: ovoid-shaped
- motility: no
pigmentation
- @ref: 31116
- production: yes
Culture and growth conditions
culture medium
- @ref: 20785
- name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
- growth: yes
- link: https://mediadive.dsmz.de/medium/693
- composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20785 | positive | growth | 30 | mesophilic |
31116 | positive | growth | 04-45 | |
31116 | positive | optimum | 35 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31116 | positive | growth | 05-10 | alkaliphile |
31116 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 31116
- oxygen tolerance: aerobe
spore formation
- @ref: 31116
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31116 | NaCl | positive | growth | 0-7 % |
31116 | NaCl | positive | optimum | 0.25 % |
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31116 | 17754 | glycerol | + | carbon source |
31116 | 17992 | sucrose | + | carbon source |
31116 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31116 | acid phosphatase | + | 3.1.3.2 |
31116 | alpha-galactosidase | + | 3.2.1.22 |
31116 | catalase | + | 1.11.1.6 |
31116 | gelatinase | + | |
31116 | pyrazinamidase | + | 3.5.1.B15 |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
20785 | surface-sterilized healthy root of Dysophylla stellata (Lour.) Benth. | Dysophylla stellata | Yunnan Province | China | CHN | Asia |
67770 | Root of Dysophylla stellata (Lour.) Benth. | Dysophylla stellata | Yunnan Province, south-west China | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Aquatic plant |
#Host Body-Site | #Plant | #Root (Rhizome) |
#Host Body-Site | #Plant | #Sterilized plant part |
Safety information
risk assessment
- @ref: 20785
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20785
- description: Rothia endophytica strain YIM 67072 16S ribosomal RNA gene, partial sequence
- accession: KC806052
- length: 1520
- database: ena
- NCBI tax ID: 1324766
GC content
@ref | GC-content | method |
---|---|---|
20785 | 53.2 | high performance liquid chromatography (HPLC) |
31116 | 53.2 |
External links
@ref: 20785
culture collection no.: DSM 26247, JCM 18541, YIM 67072
straininfo link
- @ref: 88152
- straininfo: 399533
literature
- topic: Phylogeny
- Pubmed-ID: 23710050
- title: Rothia endophytica sp. nov., an actinobacterium isolated from Dysophylla stellata (Lour.) Benth.
- authors: Xiong ZJ, Zhang JL, Zhang DF, Zhou ZL, Liu MJ, Zhu WY, Zhao LX, Xu LH, Li WJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.052522-0
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, Cardiolipins/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lamiaceae/*microbiology, Micrococcaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
20785 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26247 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26247) | |||
31116 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27445 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
88152 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399533.1 |