Strain identifier

BacDive ID: 24197

Type strain: No

Species: Citricoccus sp.

Strain Designation: SB28

Strain history: <- R. Place, ETH <- S. Burri; SB28

NCBI tax ID(s): 1978372 (species)

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General

@ref: 20500

BacDive-ID: 24197

DSM-Number: 15393

keywords: 16S sequence, Bacteria, mesophilic

description: Citricoccus sp. SB28 is a mesophilic bacterium that was isolated from ripened cheese surface, Swiss Tilsit cheese.

NCBI tax id

  • NCBI tax id: 1978372
  • Matching level: species

strain history

  • @ref: 20500
  • history: <- R. Place, ETH <- S. Burri; SB28

doi: 10.13145/bacdive24197.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Citricoccus
  • species: Citricoccus sp.
  • full scientific name: Citricoccus Altenburger et al. 2002

@ref: 20500

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Citricoccus

species: Citricoccus sp.

full scientific name: Citricoccus sp.

strain designation: SB28

type strain: no

Culture and growth conditions

culture medium

  • @ref: 20500
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 20500
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 20500
  • sample type: ripened cheese surface, Swiss Tilsit cheese
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Dairy product

taxonmaps

  • @ref: 69479
  • File name: preview.99_84123.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_8780;97_10557;98_12948;99_84123&stattab=map
  • Last taxonomy: Citricoccus lacusdiani
  • 16S sequence: AJ535636
  • Sequence Identity:
  • Total samples: 1164
  • soil counts: 241
  • aquatic counts: 168
  • animal counts: 693
  • plant counts: 62

Sequence information

16S sequences

  • @ref: 20500
  • description: Arthrobacter sp. SB28 16S rRNA gene, strain SB28
  • accession: AJ535636
  • length: 1487
  • database: ena
  • NCBI tax ID: 217029

External links

@ref: 20500

culture collection no.: DSM 15393

straininfo link

  • @ref: 88145
  • straininfo: 396756

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20500Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-15393Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15393)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88145Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396756.1