Strain identifier

BacDive ID: 24185

Type strain: Yes

Species: Agromyces subtropicus

Strain Designation: IY07-56

Culture col. no.: DSM 26153, NBRC 106454

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20273

BacDive-ID: 24185

DSM-Number: 26153

keywords: Bacteria, 16S sequence, mesophilic

description: Agromyces subtropicus IY07-56 is a mesophilic bacterium that was isolated from soil from a pineapple field.

strain history: <- M. Hamada, NBRC; NBRC 106454 <- Y. Ishida

doi: 10.13145/bacdive24185.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Agromyces
  • species: Agromyces subtropicus
  • full scientific name: Agromyces subtropicus Hamada et al. 2014

@ref: 20273

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Agromyces

species: Agromyces subtropicus

full scientific name: Agromyces subtropicus Hamada et al. 2014

strain designation: IY07-56

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 20273
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf

culture temp

  • @ref: 20273
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 20273
  • sample type: soil from a pineapple field
  • geographic location: Okinawa, Iriomote Island
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 20273
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20273
  • description: Agromyces subtropicus gene for 16S ribosomal RNA, partial sequence
  • accession: AB546310
  • length: 1473
  • database: ena
  • NCBI tax ID: 717859

GC content

  • @ref: 20273
  • GC-content: 71.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 20273

culture collection no.: DSM 26153, NBRC 106454

straininfo link

@refpassport
20218http://www.straininfo.net/strains/894485
20218http://www.straininfo.net/strains/894484

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
20273Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26153Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26153)