General

@ref: 20273

BacDive-ID: 24185

DSM-Number: 26153

keywords: 16S sequence, Bacteria, mesophilic

description: Agromyces subtropicus IY07-56 is a mesophilic bacterium that was isolated from soil from a pineapple field.

NCBI tax id

• NCBI tax id: 717859
• Matching level: species

strain history

• @ref: 20273
• history: <- M. Hamada, NBRC; NBRC 106454 <- Y. Ishida

doi: 10.13145/bacdive24185.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Micrococcales
• family: Microbacteriaceae
• genus: Agromyces
• species: Agromyces subtropicus
• full scientific name: Agromyces subtropicus Hamada et al. 2014

@ref: 20273

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Agromyces

species: Agromyces subtropicus

full scientific name: Agromyces subtropicus Hamada et al. 2014

strain designation: IY07-56

type strain: yes

Culture and growth conditions

culture medium

• @ref: 20273
• name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
• growth: yes
• link: https://mediadive.dsmz.de/medium/514
• composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

• @ref: 20273
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 20273
• sample type: soil from a pineapple field
• geographic location: Okinawa, Iriomote Island
• country: Japan
• origin.country: JPN
• continent: Asia

isolation source categories

Safety information

risk assessment

• @ref: 20273
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 20273
• description: Agromyces subtropicus gene for 16S ribosomal RNA, partial sequence
• accession: AB546310
• length: 1473
• database: ena
• NCBI tax ID: 717859

GC content

• @ref: 20273
• GC-content: 71.7
• method: high performance liquid chromatography (HPLC)

External links

@ref: 20273

culture collection no.: DSM 26153, NBRC 106454

straininfo link

• @ref: 88138
• straininfo: 401924

literature

• topic: Phylogeny
• Pubmed-ID: 24243967
• title: Agromyces iriomotensis sp. nov. and Agromyces subtropicus sp. nov., isolated from soil.
• authors: Hamada M, Shibata C, Ishida Y, Tamura T, Yamamura H, Hayakawa M, Suzuki KI
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.057349-0
• year: 2013
• mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
• topic2: Genetics

Reference