Strain identifier
BacDive ID: 24183
Type strain: 
Species: Agromyces soli
Strain Designation: MJ21
Strain history: <- MJ Lee, H-Plus Eco, Korea
NCBI tax ID(s): 659012 (species)
version 8.1 (current version)
General
@ref: 20271
BacDive-ID: 24183
DSM-Number: 27631
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Agromyces soli MJ21 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from farm soil.
NCBI tax id
- NCBI tax id: 659012
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20271 | <- KCTC; KCTC 19549 |
| 67770 | M. J. Lee MJ21. |
| 67771 | <- MJ Lee, H-Plus Eco, Korea |
doi: 10.13145/bacdive24183.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Agromyces
- species: Agromyces soli
- full scientific name: Agromyces soli Lee et al. 2011
@ref: 20271
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Agromyces
species: Agromyces soli
full scientific name: Agromyces soli Lee et al. 2011
strain designation: MJ21
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture medium
- @ref: 20271
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20271 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
murein
- @ref: 20271
- murein short key: B07
- type: B2gamma {Gly} [L-Dab] D-Glu-D-Dab
observation
- @ref: 67770
- observation: quinones: MK-12, MK-11
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 20271 | farm soil | near Daejeon | Republic of Korea | KOR | Asia |
| 67770 | Farm soil near Daejeon | Republic of Korea | KOR | Asia | |
| 67771 | From farm soil | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Engineered | #Agriculture | #Field |
| #Engineered | #Food production | #Aquaculture |
taxonmaps
- @ref: 69479
- File name: preview.99_36836.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3478;97_4265;98_27117;99_36836&stattab=map
- Last taxonomy: Agromyces mediolanus
- 16S sequence: GQ241325
- Sequence Identity:
- Total samples: 6411
- soil counts: 3220
- aquatic counts: 780
- animal counts: 1854
- plant counts: 557
Safety information
risk assessment
- @ref: 20271
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20271
- description: Agromyces soli strain MJ21 16S ribosomal RNA gene, partial sequence
- accession: GQ241325
- length: 1409
- database: ena
- NCBI tax ID: 659012
GC content
| @ref | GC-content | method |
|---|---|---|
| 20271 | 73.4 | |
| 67770 | 73.4 | high performance liquid chromatography (HPLC) |
External links
@ref: 20271
culture collection no.: DSM 27631, JCM 16247, KCTC 19549, MTCC 11074, NBRC 109063
straininfo link
- @ref: 88136
- straininfo: 406806
literature
- topic: Phylogeny
- Pubmed-ID: 20639226
- title: Agromyces soli sp. nov., isolated from farm soil.
- authors: Lee M, Ten LN, Woo SG, Park J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.021568-0
- year: 2010
- mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Amino Acids/analysis, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20271 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27631 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27631) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88136 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406806.1 |