Strain identifier

BacDive ID: 24179

Type strain: No

Species: Pleomorphomonas koreensis

Strain Designation: Y5

Strain history: <- S. T. Lee, KAIST; Y5 <- S.-H. Kim, KAIST

NCBI tax ID(s): 257440 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20738

BacDive-ID: 24179

DSM-Number: 16267

keywords: 16S sequence, Bacteria, mesophilic

description: Pleomorphomonas koreensis Y5 is a mesophilic bacterium that was isolated from Soil.

NCBI tax id

  • NCBI tax id: 257440
  • Matching level: species

strain history

  • @ref: 20738
  • history: <- S. T. Lee, KAIST; Y5 <- S.-H. Kim, KAIST

doi: 10.13145/bacdive24179.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Pleomorphomonadaceae
  • genus: Pleomorphomonas
  • species: Pleomorphomonas koreensis
  • full scientific name: Pleomorphomonas koreensis Im et al. 2006

@ref: 20738

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Pleomorphomonadaceae

genus: Pleomorphomonas

species: Pleomorphomonas koreensis

full scientific name: Pleomorphomonas koreensis Im et al. 2006

strain designation: Y5

type strain: no

Culture and growth conditions

culture medium

  • @ref: 20738
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 20738
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 20738
  • sample type: Soil
  • geographic location: Daejeon
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3720.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_1902;97_2285;98_2811;99_3720&stattab=map
  • Last taxonomy: Pleomorphomonas
  • 16S sequence: AB127971
  • Sequence Identity:
  • Total samples: 2970
  • soil counts: 978
  • aquatic counts: 901
  • animal counts: 721
  • plant counts: 370

Safety information

risk assessment

  • @ref: 20738
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20738
  • description: Pleomorphomonas koreensis gene for 16S rRNA, partial sequence, strain: Y5
  • accession: AB127971
  • length: 1421
  • database: ena
  • NCBI tax ID: 257440

External links

@ref: 20738

culture collection no.: DSM 16267

straininfo link

  • @ref: 88132
  • straininfo: 399244

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20738Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-16267Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16267)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88132Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399244.1