Strain identifier
BacDive ID: 24179
Type strain:
Species: Pleomorphomonas koreensis
Strain Designation: Y5
Strain history: <- S. T. Lee, KAIST; Y5 <- S.-H. Kim, KAIST
NCBI tax ID(s): 257440 (species)
version 8.1 (current version)
General
@ref: 20738
BacDive-ID: 24179
DSM-Number: 16267
keywords: 16S sequence, Bacteria, mesophilic
description: Pleomorphomonas koreensis Y5 is a mesophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 257440
- Matching level: species
strain history
- @ref: 20738
- history: <- S. T. Lee, KAIST; Y5 <- S.-H. Kim, KAIST
doi: 10.13145/bacdive24179.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Pleomorphomonadaceae
- genus: Pleomorphomonas
- species: Pleomorphomonas koreensis
- full scientific name: Pleomorphomonas koreensis Im et al. 2006
@ref: 20738
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Pleomorphomonadaceae
genus: Pleomorphomonas
species: Pleomorphomonas koreensis
full scientific name: Pleomorphomonas koreensis Im et al. 2006
strain designation: Y5
type strain: no
Culture and growth conditions
culture medium
- @ref: 20738
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 20738
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20738
- sample type: Soil
- geographic location: Daejeon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_3720.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_1902;97_2285;98_2811;99_3720&stattab=map
- Last taxonomy: Pleomorphomonas
- 16S sequence: AB127971
- Sequence Identity:
- Total samples: 2970
- soil counts: 978
- aquatic counts: 901
- animal counts: 721
- plant counts: 370
Safety information
risk assessment
- @ref: 20738
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20738
- description: Pleomorphomonas koreensis gene for 16S rRNA, partial sequence, strain: Y5
- accession: AB127971
- length: 1421
- database: ena
- NCBI tax ID: 257440
External links
@ref: 20738
culture collection no.: DSM 16267
straininfo link
- @ref: 88132
- straininfo: 399244
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20738 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16267 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16267) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88132 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399244.1 |