Strain identifier

BacDive ID: 24153

Type strain: Yes

Species: Listeria fleischmannii subsp. coloradonensis

Strain history: CIP <- 2014, DSMZ

NCBI tax ID(s): 1081736 (subspecies)

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General

@ref: 20629

BacDive-ID: 24153

DSM-Number: 25391

keywords: 16S sequence, Bacteria, mesophilic, Gram-positive, rod-shaped

description: Listeria fleischmannii subsp. coloradonensis DSM 25391 is a mesophilic, Gram-positive, rod-shaped bacterium that was isolated from soil from a cattle grazing pasture.

NCBI tax id

  • NCBI tax id: 1081736
  • Matching level: subspecies

strain history

@refhistory
336012014, DSMZ
20629<- K. Nightingale, Texas Tech Univ., Lubbock, Texas; TTU M1-001 <- M. Clyde Simmons
119392CIP <- 2014, DSMZ

doi: 10.13145/bacdive24153.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria fleischmannii subsp. coloradonensis
  • full scientific name: Listeria fleischmannii subsp. coloradonensis den Bakker et al. 2013

@ref: 20629

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Listeriaceae

genus: Listeria

species: Listeria fleischmannii subsp. coloradonensis

full scientific name: Listeria fleischmannii subsp. coloradonensis den Bakker et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 119392
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 20629
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33601MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
20629BHI MEDIUM (DSMZ Medium 215)yesName: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/215
119392CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
20629positivegrowth37mesophilic
33601positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
683764853esculin+hydrolysis
6837618333D-arabitol+builds acid from
6837665327D-xylose+builds acid from
6837662345L-rhamnose+builds acid from
68376320061methyl alpha-D-glucopyranoside+builds acid from
6837616988D-ribose+builds acid from
6837629042glucose 1-phosphate-builds acid from
6837616443D-tagatose-builds acid from

enzymes

@refvalueactivityec
20629catalase+1.11.1.6
20629cytochrome-c oxidase-1.9.3.1
68376alpha-mannosidase-3.2.1.24
68376beta-glucosidase+3.2.1.21

API LIST

@refDIMESCalpha MANDARLXYLRHAMDGRIBG1PTAG
20629-+-+++++--
20629-+-+++++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20629soil from a cattle grazing pasturePlatteville, COUSAUSANorth America
119392Environment, Soil sample collected on a cattle ranchNothern Colorado, USAUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Grassland
#Environmental#Terrestrial#Soil
#Host#Mammals#Bovinae (Cow, Cattle)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2810.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_1495;97_1783;98_2179;99_2810&stattab=map
  • Last taxonomy: Listeria
  • 16S sequence: JQ287762
  • Sequence Identity:
  • Total samples: 788
  • soil counts: 48
  • aquatic counts: 98
  • animal counts: 584
  • plant counts: 58

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
206291Risk group (German classification)
1193921Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20629
  • description: Listeria fleischmannii subsp. coloradonensis strain TTU M1-001 16S ribosomal RNA gene, partial sequence
  • accession: JQ287762
  • length: 1409
  • database: ena
  • NCBI tax ID: 1081736

GC content

  • @ref: 20629
  • GC-content: 38.31
  • method: sequence analysis

External links

@ref: 20629

culture collection no.: DSM 25391, ATCC BAA 2414, CIP 110717, TTU M1-001

straininfo link

  • @ref: 88111
  • straininfo: 402182

literature

  • topic: Phylogeny
  • Pubmed-ID: 23524352
  • title: Genome sequencing identifies Listeria fleischmannii subsp. coloradonensis subsp. nov., isolated from a ranch.
  • authors: den Bakker HC, Manuel CS, Fortes ED, Wiedmann M, Nightingale KK
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.048587-0
  • year: 2013
  • mesh: Animals, Bacterial Typing Techniques, Cattle/*microbiology, Colorado, DNA, Bacterial/genetics, Environmental Microbiology, Genome, Bacterial, Listeria/*classification/genetics/isolation & purification, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20629Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25391Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25391)
33601Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30528
68376Automatically annotated from API LIST
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88111Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402182.1
119392Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110717Collection of Institut Pasteur (CIP 110717)