Strain identifier
BacDive ID: 24153
Type strain:
Species: Listeria fleischmannii subsp. coloradonensis
Strain history: CIP <- 2014, DSMZ
NCBI tax ID(s): 1081736 (subspecies)
General
@ref: 20629
BacDive-ID: 24153
DSM-Number: 25391
keywords: 16S sequence, Bacteria, mesophilic, Gram-positive, rod-shaped
description: Listeria fleischmannii subsp. coloradonensis DSM 25391 is a mesophilic, Gram-positive, rod-shaped bacterium that was isolated from soil from a cattle grazing pasture.
NCBI tax id
- NCBI tax id: 1081736
- Matching level: subspecies
strain history
@ref | history |
---|---|
33601 | 2014, DSMZ |
20629 | <- K. Nightingale, Texas Tech Univ., Lubbock, Texas; TTU M1-001 <- M. Clyde Simmons |
119392 | CIP <- 2014, DSMZ |
doi: 10.13145/bacdive24153.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Listeriaceae
- genus: Listeria
- species: Listeria fleischmannii subsp. coloradonensis
- full scientific name: Listeria fleischmannii subsp. coloradonensis den Bakker et al. 2013
@ref: 20629
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Listeriaceae
genus: Listeria
species: Listeria fleischmannii subsp. coloradonensis
full scientific name: Listeria fleischmannii subsp. coloradonensis den Bakker et al. 2013
type strain: yes
Morphology
cell morphology
- @ref: 119392
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 20629
- type of hemolysis: gamma
- incubation period: 1-2 days
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
33601 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
20629 | BHI MEDIUM (DSMZ Medium 215) | yes | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water | https://mediadive.dsmz.de/medium/215 |
119392 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20629 | positive | growth | 37 | mesophilic |
33601 | positive | growth | 30 | mesophilic |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68376 | 4853 | esculin | + | hydrolysis |
68376 | 18333 | D-arabitol | + | builds acid from |
68376 | 65327 | D-xylose | + | builds acid from |
68376 | 62345 | L-rhamnose | + | builds acid from |
68376 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
68376 | 16988 | D-ribose | + | builds acid from |
68376 | 29042 | glucose 1-phosphate | - | builds acid from |
68376 | 16443 | D-tagatose | - | builds acid from |
enzymes
@ref | value | activity | ec |
---|---|---|---|
20629 | catalase | + | 1.11.1.6 |
20629 | cytochrome-c oxidase | - | 1.9.3.1 |
68376 | alpha-mannosidase | - | 3.2.1.24 |
68376 | beta-glucosidase | + | 3.2.1.21 |
API LIST
@ref | DIM | ESC | alpha MAN | DARL | XYL | RHA | MDG | RIB | G1P | TAG |
---|---|---|---|---|---|---|---|---|---|---|
20629 | - | + | - | + | + | + | + | + | - | - |
20629 | - | + | - | + | + | + | + | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
20629 | soil from a cattle grazing pasture | Platteville, CO | USA | USA | North America |
119392 | Environment, Soil sample collected on a cattle ranch | Nothern Colorado, USA | United States of America | USA | North America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Grassland |
#Environmental | #Terrestrial | #Soil |
#Host | #Mammals | #Bovinae (Cow, Cattle) |
taxonmaps
- @ref: 69479
- File name: preview.99_2810.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_1495;97_1783;98_2179;99_2810&stattab=map
- Last taxonomy: Listeria
- 16S sequence: JQ287762
- Sequence Identity:
- Total samples: 788
- soil counts: 48
- aquatic counts: 98
- animal counts: 584
- plant counts: 58
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
20629 | 1 | Risk group (German classification) |
119392 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 20629
- description: Listeria fleischmannii subsp. coloradonensis strain TTU M1-001 16S ribosomal RNA gene, partial sequence
- accession: JQ287762
- length: 1409
- database: ena
- NCBI tax ID: 1081736
GC content
- @ref: 20629
- GC-content: 38.31
- method: sequence analysis
External links
@ref: 20629
culture collection no.: DSM 25391, ATCC BAA 2414, CIP 110717, TTU M1-001
straininfo link
- @ref: 88111
- straininfo: 402182
literature
- topic: Phylogeny
- Pubmed-ID: 23524352
- title: Genome sequencing identifies Listeria fleischmannii subsp. coloradonensis subsp. nov., isolated from a ranch.
- authors: den Bakker HC, Manuel CS, Fortes ED, Wiedmann M, Nightingale KK
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.048587-0
- year: 2013
- mesh: Animals, Bacterial Typing Techniques, Cattle/*microbiology, Colorado, DNA, Bacterial/genetics, Environmental Microbiology, Genome, Bacterial, Listeria/*classification/genetics/isolation & purification, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20629 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25391 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25391) | |
33601 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/30528 | ||
68376 | Automatically annotated from API LIST | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88111 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402182.1 | |
119392 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110717 | Collection of Institut Pasteur (CIP 110717) |