Strain identifier

BacDive ID: 24150

Type strain: Yes

Species: Periweissella fabalis

Strain Designation: M75

Strain history: <- CCUG; CCUG 61472 <- I. Snauwaert, Univ. Ghent, Belgium

NCBI tax ID(s): 1070421 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21073

BacDive-ID: 24150

DSM-Number: 28407

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, ovoid-shaped

description: Periweissella fabalis M75 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from spontaneous cocoa bean fermentations.

NCBI tax id

  • NCBI tax id: 1070421
  • Matching level: species

strain history

  • @ref: 21073
  • history: <- CCUG; CCUG 61472 <- I. Snauwaert, Univ. Ghent, Belgium

doi: 10.13145/bacdive24150.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Periweissella
  • species: Periweissella fabalis
  • full scientific name: Periweissella fabalis (Snauwaert et al. 2013) Bello et al. 2022
  • synonyms

    • @ref: 20215
    • synonym: Weissella fabalis

@ref: 21073

domain: Bacteria

phylum: Bacillota

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Periweissella

species: Periweissella fabalis

full scientific name: Periweissella fabalis (Snauwaert et al. 2013) Bello et al. 2022

strain designation: M75

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30619positive1.5 µm1 µmovoid-shapedno
69480positive99.999

colony morphology

  • @ref: 62635
  • incubation period: 1 day

pigmentation

  • @ref: 30619
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 21073
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21073positivegrowth30mesophilic
30619positivegrowth15-37
62635positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
21073microaerophile
30619facultative anaerobe
62635aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

  • @ref: 30619
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 05-06 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3061917057cellobiose+carbon source
3061928757fructose+carbon source
3061917234glucose+carbon source
3061917306maltose+carbon source
3061937684mannose+carbon source
30619506227N-acetylglucosamine+carbon source
3061927082trehalose+carbon source
306194853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose+builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
21073-----------+++-----------+-+----+-----------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
21073spontaneous cocoa bean fermentationsIlheus, BahiaBrazilBRAMiddle and South America
62635CocoaBrazilBRAMiddle and South America2006-11-01

isolation source categories

Cat1Cat2Cat3
#Environmental#Microbial community
#Host Body-Site#Plant#Fruit (Seed)

taxonmaps

  • @ref: 69479
  • File name: preview.99_101836.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_41227;97_52625;98_69498;99_101836&stattab=map
  • Last taxonomy: Weissella
  • 16S sequence: HE576795
  • Sequence Identity:
  • Total samples: 2186
  • soil counts: 139
  • aquatic counts: 291
  • animal counts: 1457
  • plant counts: 299

Safety information

risk assessment

  • @ref: 21073
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21073
  • description: Weissella fabalis partial 16S rRNA gene, type strain LMG 26217T
  • accession: HE576795
  • length: 1533
  • database: ena
  • NCBI tax ID: 1070421

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Periweissella fabalis CCUG 61472GCA_012396505contigncbi1070421
66792Weissella fabalis strain CCUG 614721070421.3wgspatric1070421
66792Periweissella fabalis LMG 26217GCA_023657345contigncbi1070421

GC content

  • @ref: 30619
  • GC-content: 37

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno76.913yes
flagellatedno92.239no
gram-positiveyes91.589yes
anaerobicno90.693yes
aerobicno92.095no
halophileyes87.548no
spore-formingno93.824no
thermophileno99.418yes
glucose-utilyes87.023yes
glucose-fermentyes87.01no

External links

@ref: 21073

culture collection no.: DSM 28407, CCUG 61472, LMG 26217

straininfo link

  • @ref: 88108
  • straininfo: 374149

literature

  • topic: Phylogeny
  • Pubmed-ID: 22922535
  • title: Characterization of strains of Weissella fabalis sp. nov. and Fructobacillus tropaeoli from spontaneous cocoa bean fermentations.
  • authors: Snauwaert I, Papalexandratou Z, De Vuyst L, Vandamme P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.040311-0
  • year: 2012
  • mesh: Base Composition, Brazil, Cacao/*microbiology, DNA, Bacterial/genetics, Ecuador, Fermentation, *Food Microbiology, Genes, Bacterial, Leuconostocaceae/*classification/genetics/isolation & purification, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Weissella/*classification/genetics/isolation & purification
  • topic2: Biotechnology

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21073Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28407Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28407)
30619Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172695028776041
62635Curators of the CCUGhttps://www.ccug.se/strain?id=61472Culture Collection University of Gothenburg (CCUG) (CCUG 61472)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88108Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID374149.1