Strain identifier
BacDive ID: 24150
Type strain:
Species: Periweissella fabalis
Strain Designation: M75
Strain history: <- CCUG; CCUG 61472 <- I. Snauwaert, Univ. Ghent, Belgium
NCBI tax ID(s): 1070421 (species)
General
@ref: 21073
BacDive-ID: 24150
DSM-Number: 28407
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, ovoid-shaped
description: Periweissella fabalis M75 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from spontaneous cocoa bean fermentations.
NCBI tax id
- NCBI tax id: 1070421
- Matching level: species
strain history
- @ref: 21073
- history: <- CCUG; CCUG 61472 <- I. Snauwaert, Univ. Ghent, Belgium
doi: 10.13145/bacdive24150.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Periweissella
- species: Periweissella fabalis
- full scientific name: Periweissella fabalis (Snauwaert et al. 2013) Bello et al. 2022
synonyms
- @ref: 20215
- synonym: Weissella fabalis
@ref: 21073
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Periweissella
species: Periweissella fabalis
full scientific name: Periweissella fabalis (Snauwaert et al. 2013) Bello et al. 2022
strain designation: M75
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
30619 | positive | 1.5 µm | 1 µm | ovoid-shaped | no | |
69480 | positive | 99.999 |
colony morphology
- @ref: 62635
- incubation period: 1 day
pigmentation
- @ref: 30619
- production: yes
Culture and growth conditions
culture medium
- @ref: 21073
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21073 | positive | growth | 30 | mesophilic |
30619 | positive | growth | 15-37 | |
62635 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
21073 | microaerophile |
30619 | facultative anaerobe |
62635 | aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
halophily
- @ref: 30619
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 05-06 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30619 | 17057 | cellobiose | + | carbon source |
30619 | 28757 | fructose | + | carbon source |
30619 | 17234 | glucose | + | carbon source |
30619 | 17306 | maltose | + | carbon source |
30619 | 37684 | mannose | + | carbon source |
30619 | 506227 | N-acetylglucosamine | + | carbon source |
30619 | 27082 | trehalose | + | carbon source |
30619 | 4853 | esculin | + | hydrolysis |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | - | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21073 | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
21073 | spontaneous cocoa bean fermentations | Ilheus, Bahia | Brazil | BRA | Middle and South America | |
62635 | Cocoa | Brazil | BRA | Middle and South America | 2006-11-01 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Microbial community | |
#Host Body-Site | #Plant | #Fruit (Seed) |
taxonmaps
- @ref: 69479
- File name: preview.99_101836.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_41227;97_52625;98_69498;99_101836&stattab=map
- Last taxonomy: Weissella
- 16S sequence: HE576795
- Sequence Identity:
- Total samples: 2186
- soil counts: 139
- aquatic counts: 291
- animal counts: 1457
- plant counts: 299
Safety information
risk assessment
- @ref: 21073
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21073
- description: Weissella fabalis partial 16S rRNA gene, type strain LMG 26217T
- accession: HE576795
- length: 1533
- database: ena
- NCBI tax ID: 1070421
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Periweissella fabalis CCUG 61472 | GCA_012396505 | contig | ncbi | 1070421 |
66792 | Weissella fabalis strain CCUG 61472 | 1070421.3 | wgs | patric | 1070421 |
66792 | Periweissella fabalis LMG 26217 | GCA_023657345 | contig | ncbi | 1070421 |
GC content
- @ref: 30619
- GC-content: 37
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 76.913 | yes |
flagellated | no | 92.239 | no |
gram-positive | yes | 91.589 | yes |
anaerobic | no | 90.693 | yes |
aerobic | no | 92.095 | no |
halophile | yes | 87.548 | no |
spore-forming | no | 93.824 | no |
thermophile | no | 99.418 | yes |
glucose-util | yes | 87.023 | yes |
glucose-ferment | yes | 87.01 | no |
External links
@ref: 21073
culture collection no.: DSM 28407, CCUG 61472, LMG 26217
straininfo link
- @ref: 88108
- straininfo: 374149
literature
- topic: Phylogeny
- Pubmed-ID: 22922535
- title: Characterization of strains of Weissella fabalis sp. nov. and Fructobacillus tropaeoli from spontaneous cocoa bean fermentations.
- authors: Snauwaert I, Papalexandratou Z, De Vuyst L, Vandamme P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.040311-0
- year: 2012
- mesh: Base Composition, Brazil, Cacao/*microbiology, DNA, Bacterial/genetics, Ecuador, Fermentation, *Food Microbiology, Genes, Bacterial, Leuconostocaceae/*classification/genetics/isolation & purification, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Weissella/*classification/genetics/isolation & purification
- topic2: Biotechnology
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21073 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28407 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28407) | |||
30619 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26950 | 28776041 | |
62635 | Curators of the CCUG | https://www.ccug.se/strain?id=61472 | Culture Collection University of Gothenburg (CCUG) (CCUG 61472) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
68371 | Automatically annotated from API 50CH acid | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
88108 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID374149.1 |