Strain identifier

BacDive ID: 24120

Type strain: Yes

Species: Eisenbergiella tayi

Strain Designation: B086562

Strain history: <- I. Amir, Tel-Aviv Univ., Dept. of Mol. Microbiol. and Biotechnol., Fac. of Life Scs., Israel; B086562 <- I. Amir, Ma'ayanei Hayeshua Med. Center, Bnei-Brak, Israel

NCBI tax ID(s): 1432052 (species)

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General

@ref: 21314

BacDive-ID: 24120

DSM-Number: 26961

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Eisenbergiella tayi B086562 is an anaerobe, mesophilic bacterium that was isolated from blood of an 84-year-old male patient.

NCBI tax id

  • NCBI tax id: 1432052
  • Matching level: species

strain history

  • @ref: 21314
  • history: <- I. Amir, Tel-Aviv Univ., Dept. of Mol. Microbiol. and Biotechnol., Fac. of Life Scs., Israel; B086562 <- I. Amir, Ma'ayanei Hayeshua Med. Center, Bnei-Brak, Israel

doi: 10.13145/bacdive24120.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Eisenbergiella
  • species: Eisenbergiella tayi
  • full scientific name: Eisenbergiella tayi Amir et al. 2014

@ref: 21314

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Lachnospiraceae

genus: Eisenbergiella

species: Eisenbergiella tayi

full scientific name: Eisenbergiella tayi Amir et al. 2014

strain designation: B086562

type strain: yes

Morphology

colony morphology

  • @ref: 63075
  • incubation period: 2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21314CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)yeshttps://mediadive.dsmz.de/medium/110aName: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water
21314FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)yeshttps://mediadive.dsmz.de/medium/1203aName: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
21314COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
63075positivegrowth37mesophilic
21314positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
21314anaerobe
63075anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate+
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
21314--++++++-+---+---------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentlatitudelongitudesampling dategeographic location
21314blood of an 84-year-old male patientIsraelISRAsia31.77235.217
63075Human clinical sampleIsraelISRAsia2012-08-01Bnei-Brak

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human#Male
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_2279.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_834;97_973;98_1779;99_2279&stattab=map
  • Last taxonomy: Eisenbergiella
  • 16S sequence: KF814111
  • Sequence Identity:
  • Total samples: 10644
  • soil counts: 32
  • aquatic counts: 139
  • animal counts: 10455
  • plant counts: 18

Sequence information

16S sequences

  • @ref: 21314
  • description: Eisenbergiella tayi strain B086562 16S ribosomal RNA gene, partial sequence
  • accession: KF814111
  • length: 1390
  • database: ena
  • NCBI tax ID: 1432052

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Eisenbergiella tayi DSM 26961GCA_001881565scaffoldncbi1432052
66792Eisenbergiella tayi strain DSM 269611432052.14wgspatric1432052
66792Eisenbergiella tayi DSM 269612837317116draftimg1432052

GC content

  • @ref: 21314
  • GC-content: 46.0
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno56.083no
gram-positiveyes67.404no
anaerobicyes98.361yes
aerobicno97.244yes
halophileno94.504no
spore-formingyes80.034no
thermophileno98.65no
glucose-utilyes89.444no
motileyes76.932no
glucose-fermentyes74.114no

External links

@ref: 21314

culture collection no.: DSM 26961, ATCC BAA 2558, LMG 27400, CCUG 64075

straininfo link

  • @ref: 88080
  • straininfo: 386941

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24282142Eisenbergiella tayi gen. nov., sp. nov., isolated from human blood.Amir I, Bouvet P, Legeay C, Gophna U, Weinberger AInt J Syst Evol Microbiol10.1099/ijs.0.057331-02013Aged, 80 and over, Bacterial Typing Techniques, Base Composition, Blood/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gram-Negative Facultatively Anaerobic Rods/*classification/genetics/isolation & purification, Humans, Israel, Male, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPathogenicity
Phylogeny28279858Characterization of isolates of Eisenbergiella tayi, a strictly anaerobic Gram-stain variable bacillus recovered from human clinical materials in Canada.Bernard K, Burdz T, Wiebe D, Balcewich BM, Zimmerman T, Lagace-Wiens P, Hoang LMN, Bernier AMAnaerobe10.1016/j.anaerobe.2017.03.0052017Adolescent, Adult, Aged, Aged, 80 and over, Appendicitis/microbiology, Bacteremia/microbiology, Bacteriological Techniques, Base Composition, Canada, Clostridiales/*classification/genetics/*isolation & purification, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Female, Genome, Bacterial, Gram-Positive Bacterial Infections/*microbiology, Humans, Male, Middle Aged, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Young AdultGenetics
Phylogeny29858619Draft Genome and Description of Eisenbergiella massiliensis Strain AT11(T): A New Species Isolated from Human Feces After Bariatric Surgery.Togo AH, Diop A, Million M, Maraninchi M, Lagier JC, Robert C, Di Pinto F, Raoult D, Fournier PE, Bittar FCurr Microbiol10.1007/s00284-018-1520-22018Bacterial Typing Techniques, Bariatric Surgery, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Feces/*microbiology, France, Gastrointestinal Microbiome, *Genome, Bacterial, Genomics, Humans, Male, Middle Aged, Obesity, Morbid/*microbiology/surgery, Phylogeny, RNA, Ribosomal, 16S/geneticsGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21314Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26961Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26961)
63075Curators of the CCUGhttps://www.ccug.se/strain?id=64075Culture Collection University of Gothenburg (CCUG) (CCUG 64075)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88080Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID386941.1