Strain identifier

BacDive ID: 24104

Type strain: Yes

Species: Devosia epidermidihirudinis

Strain Designation: E84

Strain history: CIP <- 2012, P. Kämpfer, Giessen Univ., Giessen, Germany: strain E84 <- 2009, L. Kaiser

NCBI tax ID(s): 1293439 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 20528

BacDive-ID: 24104

DSM-Number: 25750

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Devosia epidermidihirudinis E84 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from skin of a juvenile medical leech .

NCBI tax id

  • NCBI tax id: 1293439
  • Matching level: species

strain history

@refhistory
20528<- P. Kämpfer, Justus-Liebig-Universität, Inst. f. Angew. Mikrobiology, Giessen, Germany; E84 <- L. Kaiser
119089CIP <- 2012, P. Kämpfer, Giessen Univ., Giessen, Germany: strain E84 <- 2009, L. Kaiser

doi: 10.13145/bacdive24104.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Devosiaceae
  • genus: Devosia
  • species: Devosia epidermidihirudinis
  • full scientific name: Devosia epidermidihirudinis Galatis et al. 2013

@ref: 20528

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Devosiaceae

genus: Devosia

species: Devosia epidermidihirudinis

full scientific name: Devosia epidermidihirudinis Galatis et al. 2013

strain designation: E84

type strain: yes

Morphology

cell morphology

  • @ref: 119089
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 20528
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41954MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
20528TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yesName: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled waterhttps://mediadive.dsmz.de/medium/545
119089CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566
119089CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
20528positivegrowth28mesophilic
41954positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119089
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11908917632nitrate-reduction
11908916301nitrite-reduction

metabolite production

  • @ref: 119089
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
119089oxidase+
119089catalase-1.11.1.6
119089urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119089-++--+--+-++-+-+++--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
20528skin of a juvenile medical leech ( Hirudo verbana )Hirudo verbanaHessen, BiebertalGermanyDEUEurope
119089Animal, From the surface of a juvenile leechBiebertal, HessenGermanyDEUEurope2009

isolation source categories

Cat1Cat2Cat3
#Host#Invertebrates (Other)#Annelida
#Host Body-Site#Organ#Skin, Nail, Hair

taxonmaps

  • @ref: 69479
  • File name: preview.99_2114.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_1058;97_1236;98_1484;99_2114&stattab=map
  • Last taxonomy: Devosia epidermidihirudinis
  • 16S sequence: KC254735
  • Sequence Identity:
  • Total samples: 167
  • soil counts: 46
  • aquatic counts: 45
  • animal counts: 65
  • plant counts: 11

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
205281Risk group (German classification)
1190891Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20528
  • description: Devosia epidermidihirudinis strain E84T 16S ribosomal RNA gene, partial sequence
  • accession: KC254735
  • length: 1351
  • database: ena
  • NCBI tax ID: 1293439

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Devosia epidermidihirudinis E84GCA_000971295contigncbi1293439
66792Devosia epidermidihirudinis E842639762899draftimg1293439

External links

@ref: 20528

culture collection no.: DSM 25750, CCM 8398, CIP 110375, LMG 26909

straininfo link

  • @ref: 88064
  • straininfo: 396867

literature

  • topic: Phylogeny
  • Pubmed-ID: 23446703
  • title: Devosia epidermidihirudinis sp. nov. isolated from the surface of a medical leech.
  • authors: Galatis H, Martin K, Kampfer P, Glaeser SP
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-013-9895-3
  • year: 2013
  • mesh: Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hyphomicrobiaceae/*classification/genetics/*isolation & purification, Leeches/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20528Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25750Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25750)
41954Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8227
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88064Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396867.1
119089Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110375Collection of Institut Pasteur (CIP 110375)