Strain identifier
BacDive ID: 24101
Type strain: 
Species: Sulfurimonas gotlandica
Strain Designation: GD1
Strain history: M. Labrenz GD1.
NCBI tax ID(s): 1176482 (species)
version 8.1 (current version)
General
@ref: 20846
BacDive-ID: 24101
DSM-Number: 19862
keywords: genome sequence, Bacteria, anaerobe, psychrophilic, Gram-negative, motile, spiral-shaped
description: Sulfurimonas gotlandica GD1 is an anaerobe, psychrophilic, Gram-negative bacterium that was isolated from pelagic zone, oxic-anoxic interface, 215 m depth.
NCBI tax id
- NCBI tax id: 1176482
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20846 | <- M. Labrenz, Leibniz Institute for Baltic Sea Research, Rostock-Warnemünde, Germany; GD1 |
| 67770 | M. Labrenz GD1. |
doi: 10.13145/bacdive24101.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Sulfurimonas
- species: Sulfurimonas gotlandica
- full scientific name: Sulfurimonas gotlandica Labrenz et al. 2013
@ref: 20846
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Sulfurimonas
species: Sulfurimonas gotlandica
full scientific name: Sulfurimonas gotlandica Labrenz et al. 2013
strain designation: GD1
type strain: yes
Morphology
cell morphology
- @ref: 30979
- gram stain: negative
- cell length: 2.1 µm
- cell width: 0.66 µm
- cell shape: spiral-shaped
- motility: yes
colony morphology
- @ref: 20846
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 20846
- name: SULFURIMONAS GOTLANDICA MEDIUM (DSMZ Medium 1513)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1513
- composition: Name: SULFURIMONAS GOTLANDICA MEDIUM (DSMZ Medium 1513) Composition: NaCl 5.53892 g/l Na2S2O3 x 5 H2O 2.47505 g/l HEPES buffer 2.37525 g/l MgCl2 x 6 H2O 2.28543 g/l KNO3 1.00798 g/l Na2SO4 0.908184 g/l CaCl2 x 2 H2O 0.339321 g/l NaHCO3 0.199601 g/l KCl 0.149701 g/l NH4Cl 0.0499002 g/l SrCl2 0.00798403 g/l NaF 0.00399202 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l K2HPO4 0.000998004 g/l NaOH 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Thiamine HCl 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l Na2WO4 x 2 H2O 3.99202e-06 g/l Na2SeO3 x 5 H2O 2.99401e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20846 | positive | growth | 15 | psychrophilic |
| 30979 | positive | growth | 04-20 | psychrophilic |
| 30979 | positive | optimum | 15 | psychrophilic |
| 67770 | positive | growth | 15 | psychrophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30979 | positive | growth | 6.7-8.0 |
| 30979 | positive | optimum | 7.35 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 20846 | anaerobe |
| 30979 | facultative anaerobe |
halophily
- @ref: 30979
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 1.5 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30979 | 30089 | acetate | + | carbon source |
| 30979 | 15740 | formate | + | carbon source |
| 30979 | 15361 | pyruvate | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 20846 | pelagic zone, oxic-anoxic interface, 215 m depth | Gotland Deep in the central Baltic Sea | Latvia | LVA | Europe | 57.32 | 20.05 |
| 67770 | Sulfidic water of a pelagic redox zone of the central Baltic Sea |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Environmental | #Aquatic |
| #Condition | #Anoxic (anaerobic) |
Safety information
risk assessment
- @ref: 20846
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sulfurimonas gotlandica GD1 | 929558.9 | wgs | patric | 929558 |
| 66792 | Sulfurimonas gotlandica GD1 | 929558.5 | wgs | patric | 929558 |
| 66792 | Sulfurimonas gotlandica GD1 | 2811995045 | complete | img | 929558 |
| 67770 | Sulfurimonas gotlandica GD1 | GCA_000242915 | complete | ncbi | 929558 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 20846 | 33.6 | sequence analysis |
| 30979 | 33.6 | |
| 67770 | 33.6 | genome sequence analysis |
External links
@ref: 20846
culture collection no.: DSM 19862, JCM 16533
straininfo link
- @ref: 88063
- straininfo: 403227
literature
- topic: Phylogeny
- Pubmed-ID: 23749282
- title: Sulfurimonas gotlandica sp. nov., a chemoautotrophic and psychrotolerant epsilonproteobacterium isolated from a pelagic redoxcline, and an emended description of the genus Sulfurimonas.
- authors: Labrenz M, Grote J, Mammitzsch K, Boschker HTS, Laue M, Jost G, Glaubitz S, Jurgens K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.048827-0
- year: 2013
- mesh: Base Composition, *Chemoautotrophic Growth, DNA, Bacterial/genetics, Epsilonproteobacteria/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Hydrogen/metabolism, Molecular Sequence Data, Nitrates/metabolism, Nitrites/metabolism, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sulfur/metabolism, Water Microbiology
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20846 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19862 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19862) | |||
| 30979 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27309 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 88063 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403227.1 |