Strain identifier

BacDive ID: 24077

Type strain: Yes

Species: Haloferax larsenii

Strain Designation: ZJ206

Strain history: X.-W. Xu ZJ206.

NCBI tax ID(s): 1227460 (strain), 302484 (species)

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General

@ref: 20966

BacDive-ID: 24077

DSM-Number: 27190

keywords: genome sequence, 16S sequence, Archaea, aerobe, mesophilic, Gram-negative, motile

description: Haloferax larsenii ZJ206 is an aerobe, mesophilic, Gram-negative archaeon that was isolated from solar saltern.

NCBI tax id

NCBI tax idMatching level
302484species
1227460strain

strain history

@refhistory
20966<- JCM <- X.-W. Xu, Zhejiang Univ., Hangzhou, China; ZJ206
67770X.-W. Xu ZJ206.

doi: 10.13145/bacdive24077.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Haloferacales
  • family: Haloferacaceae
  • genus: Haloferax
  • species: Haloferax larsenii
  • full scientific name: Haloferax larsenii Xu et al. 2007

@ref: 20966

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Haloferacaceae

genus: Haloferax

species: Haloferax larsenii

full scientific name: Haloferax larsenii Xu et al. 2007

strain designation: ZJ206

type strain: yes

Morphology

cell morphology

  • @ref: 31872
  • gram stain: negative
  • cell width: 0.8-1.5 µm
  • motility: yes

pigmentation

  • @ref: 31872
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20966
  • name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/372
  • composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20966positivegrowth37mesophilic
31872positivegrowth25-55
31872positiveoptimum42-45thermophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
31872positivegrowth6-8.5alkaliphile
31872positiveoptimum6.5-7

Physiology and metabolism

oxygen tolerance

  • @ref: 31872
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
31872NaClpositivegrowth5.8-27.84 %
31872NaClpositiveoptimum12.76-19.72 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3187216449alanine+carbon source
3187228757fructose+carbon source
3187217234glucose+carbon source
3187217754glycerol+carbon source
3187224996lactate+carbon source
3187225115malate+carbon source
3187217306maltose+carbon source
3187237684mannose+carbon source
3187218257ornithine+carbon source
3187215361pyruvate+carbon source
3187230031succinate+carbon source
3187217992sucrose+carbon source
3187217632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
3187216136hydrogen sulfideyes
3187235581indoleyes

metabolite tests

  • @ref: 31872
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
31872catalase+1.11.1.6
31872cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20966solar salternZhe-Jiang ProvinceChinaCHNAsia
67770Solar saltern in Zhe-Jiang ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_187279.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17828;96_68792;97_89434;98_121843;99_187279&stattab=map
  • Last taxonomy: Haloferax
  • 16S sequence: AY838278
  • Sequence Identity:
  • Total samples: 31
  • soil counts: 8
  • aquatic counts: 21
  • animal counts: 1
  • plant counts: 1

Safety information

risk assessment

  • @ref: 20966
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20966
  • description: Haloferax larsenii strain ZJ206 16S ribosomal RNA gene, partial sequence
  • accession: AY838278
  • length: 1473
  • database: ena
  • NCBI tax ID: 302484

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haloferax larsenii JCM 139172554235500draftimg1227460
67770Haloferax larsenii JCM 13917GCA_000336955contigncbi1227460
66792Haloferax larsenii JCM 139171227460.3wgspatric1227460

GC content

@refGC-contentmethod
2096662.2thermal denaturation, midpoint method (Tm)
3187261.4-63

External links

@ref: 20966

culture collection no.: DSM 27190, CGMCC 1.5347, JCM 13917

straininfo link

  • @ref: 88043
  • straininfo: 301373

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17392193Haloferax larsenii sp. nov., an extremely halophilic archaeon from a solar saltern.Xu XW, Wu YH, Wang CS, Oren A, Zhou PJ, Wu MInt J Syst Evol Microbiol10.1099/ijs.0.64573-02007China, DNA, Archaeal/genetics, DNA, Ribosomal/genetics, Haloferax/*classification/genetics/isolation & purification/*physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride, *Soil Microbiology, *Water MicrobiologyGenetics
Phylogeny26906098Isolation and characterization of extremely halophilic CO-oxidizing Euryarchaeota from hypersaline cinders, sediments and soils and description of a novel CO oxidizer, Haloferax namakaokahaiae Mke2.3T, sp. nov.McDuff S, King GM, Neupane S, Myers MRFEMS Microbiol Ecol10.1093/femsec/fiw0282016Aerobiosis, Carbon Monoxide/*metabolism, Chile, DNA, Ribosomal/genetics, Genome, Archaeal/genetics, Geologic Sediments/microbiology, *Haloferax/genetics/isolation & purification/metabolism, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sodium Chloride/*metabolism, Soil/chemistry, *Soil MicrobiologyMetabolism
Metabolism28378299Activity-guided separation and characterization of new halocin HA3 from fermented broth of Haloferax larsenii HA3.Kumar V, Tiwari SKExtremophiles10.1007/s00792-017-0930-62017Archaeal Proteins/*chemistry/metabolism, Bacteriocins/chemistry/genetics/*metabolism, Fermentation, Haloferax/*metabolism, Protein Stability, ProteolysisStress

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20966Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27190Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27190)
31872Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172813228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88043Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID301373.1