Strain identifier

BacDive ID: 24038

Type strain: Yes

Species: Chryseobacterium carnipullorum

Strain Designation: 9_R23581

Strain history: <- C. J. Hugo, Univ. of the Free State, Dept. of Microbial, Biochem. and Food Biotechnol., Bloemfontein, South Africa; 9_R23581

NCBI tax ID(s): 1124835 (species)

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General

@ref: 20933

BacDive-ID: 24038

DSM-Number: 25581

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Chryseobacterium carnipullorum 9_R23581 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from raw chicken in a poultry processing plant.

NCBI tax id

  • NCBI tax id: 1124835
  • Matching level: species

strain history

  • @ref: 20933
  • history: <- C. J. Hugo, Univ. of the Free State, Dept. of Microbial, Biochem. and Food Biotechnol., Bloemfontein, South Africa; 9_R23581

doi: 10.13145/bacdive24038.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium carnipullorum
  • full scientific name: Chryseobacterium carnipullorum Charimba et al. 2013

@ref: 20933

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium carnipullorum

full scientific name: Chryseobacterium carnipullorum Charimba et al. 2013

strain designation: 9_R23581

type strain: yes

Morphology

cell morphology

  • @ref: 30999
  • gram stain: negative
  • cell length: 0.85 µm
  • cell width: 0.39 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30999
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20933
  • name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/545
  • composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20933positivegrowth28mesophilic
30999positiveoptimum27.5mesophilic

culture pH

  • @ref: 30999
  • ability: positive
  • type: optimum
  • pH: 6

Physiology and metabolism

oxygen tolerance

  • @ref: 30999
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30999
  • spore formation: no

halophily

  • @ref: 30999
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 01-03 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3099930089acetate+carbon source
30999286442-oxopentanoate+carbon source
3099922653asparagine+carbon source
3099916236ethanol+carbon source
3099924175galacturonate+carbon source
309995291gelatin+carbon source
3099932323glucuronamide+carbon source
3099929987glutamate+carbon source
3099937684mannose+carbon source
3099917272propionate+carbon source
3099930031succinate+carbon source
3099953424tween 20+carbon source
3099953426tween 80+carbon source
3099917632nitrate+reduction

enzymes

@refvalueactivityec
30999acid phosphatase+3.1.3.2
30999catalase+1.11.1.6
30999cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 20933
  • sample type: raw chicken in a poultry processing plant
  • geographic location: Free State Prov., Bloemfontein
  • country: South Africa
  • origin.country: ZAF
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Meat
#Engineered#Industrial#Plant (Factory)
#Host#Birds#Chicken

taxonmaps

  • @ref: 69479
  • File name: preview.99_3362.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_753;97_1893;98_2323;99_3362&stattab=map
  • Last taxonomy: Chryseobacterium
  • 16S sequence: JN935269
  • Sequence Identity:
  • Total samples: 749
  • soil counts: 166
  • aquatic counts: 108
  • animal counts: 434
  • plant counts: 41

Safety information

risk assessment

  • @ref: 20933
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20933
  • description: Chryseobacterium carnipullorum strain 9_R23581 16S ribosomal RNA gene, partial sequence
  • accession: JN935269
  • length: 1412
  • database: ena
  • NCBI tax ID: 1124835

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium carnipullorum DSM 25581GCA_900142785contigncbi1124835
66792Chryseobacterium carnipullorum strain DSM 255811124835.4wgspatric1124835
66792Chryseobacterium carnipullorum DSM 255812695420920draftimg1124835

GC content

@refGC-contentmethod
2093336.7high performance liquid chromatography (HPLC)
3099936.7

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.77no
flagellatedno96.693yes
gram-positiveno97.476no
anaerobicno99.482no
aerobicyes92.446yes
halophileno94.881no
spore-formingno93.18yes
thermophileno99.861no
glucose-utilyes86.998no
glucose-fermentno93.641no

External links

@ref: 20933

culture collection no.: DSM 25581, LMG 26732

straininfo link

  • @ref: 88011
  • straininfo: 378585

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny32895493Chryseobacterium antibioticum sp. nov. with antimicrobial activity against Gram-negative bacteria, isolated from Arctic soil.Dahal RH, Chaudhary DK, Kim DU, Pandey RP, Kim JJ Antibiot (Tokyo)10.1038/s41429-020-00367-12020Anti-Bacterial Agents/*pharmacology, Arctic Regions, Chryseobacterium/*chemistry/classification/genetics, Classification, Computer Simulation, Genome, Bacterial, Gram-Negative Bacteria/*drug effects, Lipids/chemistry, Microbial Sensitivity Tests, Nucleotides/chemistry, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S, *Soil MicrobiologyGenetics
Metabolism34091055Heterologous expression and characterisation of a keratinase produced by Chryseobacterium carnipullorum.Mwanza EP, van der Westhuizen WA, Boucher CE, Charimba G, Hugo CProtein Expr Purif10.1016/j.pep.2021.1059262021Animals, *Bacterial Proteins/chemistry/genetics/metabolism, Chickens/microbiology, *Chryseobacterium/enzymology/genetics, Enzyme Stability, Escherichia coli/genetics, Feathers/metabolism, *Peptide Hydrolases/chemistry/genetics/metabolism, *Recombinant Proteins/chemistry/genetics/metabolism, TemperatureEnzymology

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20933Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25581Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25581)
30999Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172732928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88011Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID378585.1