Strain identifier

BacDive ID: 24031

Type strain: Yes

Species: Muricauda taeanensis

Strain Designation: Ar-22

Strain history: Y.-H. Wu Ar-22.

NCBI tax ID(s): 1055723 (species)

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General

@ref: 20664

BacDive-ID: 24031

DSM-Number: 26351

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Muricauda taeanensis Ar-22 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1055723
  • Matching level: species

strain history

@refhistory
20664<- Y.-H. Wu, Second Inst. Oceanography, State Oceanic Admin., Hangzhou, China; Ar-22
67770Y.-H. Wu Ar-22.

doi: 10.13145/bacdive24031.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Muricauda
  • species: Muricauda taeanensis
  • full scientific name: Muricauda taeanensis Kim et al. 2013

  • synonyms

    @refsynonym
    20215Allomuricauda antarctica
    20215Allomuricauda taeanensis
    20215Muricauda antarctica

@ref: 20664

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Muricauda

species: Muricauda antarctica

full scientific name: Muricauda antarctica Wu et al. 2013

strain designation: Ar-22

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30952negative1.5 µm1.5 µmrod-shapedno
69480negative99.979

pigmentation

  • @ref: 30952
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20664
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20664positivegrowth28mesophilic
30952positivegrowth15-37
30952positiveoptimum35mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
30952positivegrowth5.4-8.4
30952positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30952
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30952no
69481no100
69480no99.999

halophily

@refsaltgrowthtested relationconcentration
30952NaClpositivegrowth0-10 %
30952NaClpositiveoptimum2 %

observation

@refobservation
30952aggregates in clumps
67770quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3095222599arabinose+carbon source
3095224265gluconate+carbon source
3095217234glucose+carbon source
3095217306maltose+carbon source
3095237684mannose+carbon source
30952506227N-acetylglucosamine+carbon source

enzymes

@refvalueactivityec
30952alkaline phosphatase+3.1.3.1
30952alpha-galactosidase+3.2.1.22
30952catalase+1.11.1.6
30952cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
20664seawaterAntarctica, near Cape Darnley, Prydz Bay (70° 30' 18'' E, 68° 00' 18'' SAntarcticaATAAustralia and Oceania-68.00570.505
67770Antarctic seawater sample collected from the westren part of Prydz Baynear Cape DarnleyAntarcticaATAAntarctica

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_7950.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15779;96_885;97_4517;98_5801;99_7950&stattab=map
  • Last taxonomy: Muricauda
  • 16S sequence: JN166984
  • Sequence Identity:
  • Total samples: 484
  • soil counts: 95
  • aquatic counts: 380
  • animal counts: 8
  • plant counts: 1

Safety information

risk assessment

  • @ref: 20664
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20664
  • description: Muricauda antarctica strain Ar-22 16S ribosomal RNA gene, partial sequence
  • accession: JN166984
  • length: 1478
  • database: ena
  • NCBI tax ID: 1055723

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Muricauda antarctica strain CGMCC 1.121741055723.5wgspatric1055723
66792Muricauda antarctica strain DSM 263511055723.12wgspatric1055723
66792Muricauda antarctica DSM 263512619619048draftimg1055723
66792Muricauda antarctica CGMCC 1.121742671180021draftimg1055723
67770Allomuricauda taeanensis DSM 26351GCA_900112295scaffoldncbi1005926
67770Allomuricauda taeanensis CGMCC 1.12174GCA_900142405scaffoldncbi1005926

GC content

@refGC-contentmethod
2066444.8thermal denaturation, midpoint method (Tm)
3095244.8
6777044.8high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.43yes
flagellatedno96.889yes
gram-positiveno98.15yes
anaerobicno99.041no
aerobicyes82.263no
halophileno84.943no
spore-formingno97.108no
thermophileno98.896no
glucose-utilyes84.599yes
glucose-fermentno87.73no

External links

@ref: 20664

culture collection no.: DSM 26351, CGMCC 1.12174, JCM 18450

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23543499Muricauda antarctica sp. nov., a marine member of the Flavobacteriaceae isolated from Antarctic seawater.Wu YH, Yu PS, Zhou YD, Xu L, Wang CS, Wu M, Oren A, Xu XWInt J Syst Evol Microbiol10.1099/ijs.0.048355-02013Antarctic Regions, Bacterial Typing Techniques, Base Composition, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Xanthophylls/analysis, ZeaxanthinsGenetics
Phylogeny29932387Muricauda iocasae sp. nov., isolated from deep sea sediment of the South China Sea.Liu SQ, Sun QL, Sun YY, Yu C, Sun LInt J Syst Evol Microbiol10.1099/ijsem.0.0028702018Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny31329092Roseovarius amoyensis sp. nov. and Muricauda amoyensis sp. nov., isolated from the Xiamen coast.Li G, Lai Q, Yan P, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0035952019Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistryEnzymology
Phylogeny33095696Muricauda maritima sp. nov., Muricauda aequoris sp. nov. and Muricauda oceanensis sp. nov., three marine bacteria isolated from seawater.Guo LL, Wu D, Sun C, Cheng H, Xu XW, Wu M, Wu YHInt J Syst Evol Microbiol10.1099/ijsem.0.0045222020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny33709904Muricauda sediminis sp. nov., isolated from western Pacific Ocean sediment.Zhu S, Xue Z, Huang Y, Chen X, Ren N, Chen T, Chen Y, Yang J, Chen JInt J Syst Evol Microbiol10.1099/ijsem.0.0047572021

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20664Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26351Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26351)
30952Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172728228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1