Strain identifier

BacDive ID: 24030

Type strain: Yes

Species: Muricauda zhangzhouensis

Strain Designation: 12C25

Strain history: <- Y. Caiyun, Xiamen University, Inst. of Applied and Environmental Microbiol.; 12C25

NCBI tax ID(s): 1073328 (species)

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General

@ref: 20663

BacDive-ID: 24030

DSM-Number: 25030

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Muricauda zhangzhouensis 12C25 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from mangrove sediment.

NCBI tax id

  • NCBI tax id: 1073328
  • Matching level: species

strain history

  • @ref: 20663
  • history: <- Y. Caiyun, Xiamen University, Inst. of Applied and Environmental Microbiol.; 12C25

doi: 10.13145/bacdive24030.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Muricauda
  • species: Muricauda zhangzhouensis
  • full scientific name: Muricauda zhangzhouensis Yang et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Allomuricauda zhangzhouensis

@ref: 20663

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Muricauda

species: Muricauda zhangzhouensis

full scientific name: Muricauda zhangzhouensis Yang et al. 2013

strain designation: 12C25

type strain: yes

Morphology

cell morphology

  • @ref: 30639
  • gram stain: negative
  • cell length: 2.7 µm
  • cell width: 0.475 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30639
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20663
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20663positivegrowth28mesophilic
30639positivegrowth10-40
30639positiveoptimum26.5mesophilic

culture pH

@refabilitytypepHPH range
30639positivegrowth04-11alkaliphile
30639positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30639
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30639
  • spore formation: no

observation

  • @ref: 30639
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3063930089acetate+carbon source
3063921217L-alaninamide+carbon source
3063916449alanine+carbon source
3063940585alpha-cyclodextrin+carbon source
30639286442-oxopentanoate+carbon source
3063922653asparagine+carbon source
3063935391aspartate+carbon source
3063917057cellobiose+carbon source
3063923652dextrin+carbon source
3063928757fructose+carbon source
3063928260galactose+carbon source
3063924265gluconate+carbon source
3063917234glucose+carbon source
3063929987glutamate+carbon source
3063915428glycine+carbon source
3063928087glycogen+carbon source
3063924996lactate+carbon source
3063917716lactose+carbon source
3063917306maltose+carbon source
3063937684mannose+carbon source
3063928053melibiose+carbon source
3063937657methyl D-glucoside+carbon source
3063951850methyl pyruvate+carbon source
30639506227N-acetylglucosamine+carbon source
3063917272propionate+carbon source
3063916634raffinose+carbon source
3063926546rhamnose+carbon source
3063930911sorbitol+carbon source
3063930031succinate+carbon source
3063917992sucrose+carbon source
3063927082trehalose+carbon source
3063953423tween 40+carbon source
3063953426tween 80+carbon source
306394853esculin+hydrolysis

enzymes

@refvalueactivityec
30639acid phosphatase+3.1.3.2
30639alkaline phosphatase+3.1.3.1
30639catalase+1.11.1.6
30639gelatinase+
30639cytochrome oxidase+1.9.3.1
30639urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 20663
  • sample type: mangrove sediment
  • geographic location: Fujian province, Fugong Mangrove Nature Reservation Area (117° 54' E, 24° 23' N)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 24.3833
  • longitude: 117.9

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Aquatic#Sediment
#Host#Plants#Tree

Safety information

risk assessment

  • @ref: 20663
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20663
  • description: Muricauda zhangzhouensis strain 12C25 16S ribosomal RNA gene, partial sequence
  • accession: JN426849
  • length: 1447
  • database: ena
  • NCBI tax ID: 1073328

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Allomuricauda zhangzhouensis CGMCC 1.11028GCA_900102925contigncbi1073328
66792Allomuricauda zhangzhouensis DSM 25030GCA_900106825contigncbi1073328
66792Muricauda zhangzhouensis strain CGMCC 1.110281073328.3wgspatric1073328
66792Muricauda zhangzhouensis strain DSM 250301073328.4wgspatric1073328
66792Muricauda zhangzhouensis CGMCC 1.110282667527237draftimg1073328
66792Muricauda zhangzhouensis DSM 250302617270731draftimg1073328

GC content

@refGC-contentmethod
2066339.9high performance liquid chromatography (HPLC)
3063939.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.774yes
flagellatedno96.888yes
gram-positiveno98.062no
anaerobicno99.074yes
aerobicyes82.156yes
halophileno85.256no
spore-formingno97.195yes
thermophileno98.105yes
glucose-utilyes87.577yes
glucose-fermentno87.824no

External links

@ref: 20663

culture collection no.: DSM 25030, CGMCC 1.11028, MCCC 1F01096

straininfo link

  • @ref: 88004
  • straininfo: 401656

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23159758Muricauda zhangzhouensis sp. nov., isolated from mangrove sediment.Yang C, Li Y, Guo Q, Lai Q, Wei J, Zheng T, Tian YInt J Syst Evol Microbiol10.1099/ijs.0.040881-02012Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny35103584Muricauda aurea sp. nov. and Muricauda profundi sp. nov., two marine bacteria isolated from deep sea sediment of Pacific Ocean.Zhao S, Liu R, Lai Q, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0052172022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20663Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25030Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25030)
30639Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172697028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
88004Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401656.1