Strain identifier
BacDive ID: 24027
Type strain: 
Species: Aquimarina megaterium
Strain Designation: XH134
Strain history: X.-H. Zhang XH134.
NCBI tax ID(s): 1443666 (species)
version 8.1 (current version)
General
@ref: 20575
BacDive-ID: 24027
DSM-Number: 25596
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Aquimarina megaterium XH134 is a mesophilic bacterium that was isolated from surface seawater.
NCBI tax id
- NCBI tax id: 1443666
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20575 | <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; XH134 |
| 67770 | X.-H. Zhang XH134. |
doi: 10.13145/bacdive24027.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Aquimarina
- species: Aquimarina megaterium
- full scientific name: Aquimarina megaterium Yu et al. 2014
@ref: 20575
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Aquimarina
species: Aquimarina megaterium
full scientific name: Aquimarina megaterium Yu et al. 2014
strain designation: XH134
type strain: no
Morphology
colony morphology
- @ref: 20575
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 20575
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20575 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | latitude | longitude |
|---|---|---|---|---|
| 20575 | surface seawater | South Pacific Gyre at station U1371 (45° 58' S 163° 11' W) | -45.9667 | -163.183 |
| 67770 | Surface seawater in the South Pacific Gyre (45° 58' S 163° 11' W) | -45.9667 | -163.183 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_1125.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_492;97_561;98_645;99_1125&stattab=map
- Last taxonomy: Aquimarina megaterium
- 16S sequence: KC476292
- Sequence Identity:
- Total samples: 1224
- soil counts: 37
- aquatic counts: 1141
- animal counts: 41
- plant counts: 5
Safety information
risk assessment
- @ref: 20575
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20575 | Aquimarina megaterium XH134 16S ribosomal RNA gene, partial sequence | KC476292 | 1485 | ena | 1296416 |
| 67770 | Aquimarina sp. U1371-101227-XH134 16S ribosomal RNA gene, partial sequence | JQ082192 | 1423 | ena | 1171531 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aquimarina megaterium XH134 | 2585427830 | draft | img | 1296416 |
| 67770 | Aquimarina megaterium XH134 | GCA_000520975 | contig | ncbi | 1296416 |
GC content
- @ref: 20575
- GC-content: 32.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 20575
culture collection no.: DSM 25596, CGMCC 1.12186, JCM 18215
straininfo link
- @ref: 88001
- straininfo: 401389
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24030690 | Aquimarina megaterium sp. nov., isolated from seawater. | Yu T, Zhang Z, Fan X, Shi X, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.055517-0 | 2013 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 24626966 | Aquimarina pacifica sp. nov., isolated from seawater. | Zhang Z, Yu T, Xu T, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.062695-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 24906660 | Aquimarina atlantica sp. nov., isolated from surface seawater of the Atlantic Ocean. | Li G, Lai Q, Sun F, Liu X, Xie Y, Du Y, Li G, Shao Z | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0196-2 | 2014 | Atlantic Ocean, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20575 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25596 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25596) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88001 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401389.1 |