Strain identifier

BacDive ID: 24025

Type strain: Yes

Species: Flavobacterium longum

Strain history: CIP <- 2019, JCM <- 2013, D. Fujii, Yakult Central Inst. Microbiol. Res., Kunitachi, Japan: strain YIT 12745

NCBI tax ID(s): 1299340 (species)

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General

@ref: 20572

BacDive-ID: 24025

DSM-Number: 27077

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Flavobacterium longum DSM 27077 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from sludge from wastewater treatment plant associated with a facility, that produces a fermented milk drink.

NCBI tax id

  • NCBI tax id: 1299340
  • Matching level: species

strain history

@refhistory
20572<- D. Fujii, Yakult Central Inst. Microbiol. Res., Kunitachi, Japan; YIT 12745 <- F. Nagai; strain 75
67770D. Fujii strain 75 (=YIT 12745).
120653CIP <- 2019, JCM <- 2013, D. Fujii, Yakult Central Inst. Microbiol. Res., Kunitachi, Japan: strain YIT 12745

doi: 10.13145/bacdive24025.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium longum
  • full scientific name: Flavobacterium longum Fujii et al. 2014

@ref: 20572

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium longum

full scientific name: Flavobacterium longum Fujii et al. 2014

type strain: yes

Morphology

cell morphology

  • @ref: 120653
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20572R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
120653CIP Medium 372yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=372

culture temp

@refgrowthtypetemperaturerange
20572positivegrowth25mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
20572sludge from wastewater treatment plant associated with a facility, that produces a fermented milk drinkSaga Prefecture, Yakult Honsha Co. Ltd.JapanJPNAsia
67770Sludge from a wastewater treatment plant in Saga Pref.JapanJPNAsia
120653Environment, Sludge from wastewaterJapanJPNAsia2012-01-11

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production
#Engineered#Waste#Water treatment plant
#Environmental#Terrestrial#Mud (Sludge)
#Host Body Product#Fluids#Milk

taxonmaps

  • @ref: 69479
  • File name: preview.99_27207.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_13492;97_16429;98_20383;99_27207&stattab=map
  • Last taxonomy: Flavobacterium longum subclade
  • 16S sequence: AB795014
  • Sequence Identity:
  • Total samples: 2860
  • soil counts: 618
  • aquatic counts: 1750
  • animal counts: 317
  • plant counts: 175

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
205721Risk group (German classification)
1206531Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20572
  • description: Flavobacterium longum gene for 16S ribosomal RNA, partial sequence
  • accession: AB795014
  • length: 1468
  • database: ena
  • NCBI tax ID: 1299340

GC content

@refGC-contentmethod
2057248.7high performance liquid chromatography (HPLC)
6777048.4-49high performance liquid chromatography (HPLC)

External links

@ref: 20572

culture collection no.: DSM 27077, JCM 19141, YIT 12745, CIP 111716

straininfo link

  • @ref: 87999
  • straininfo: 402787

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24453232Flavobacterium longum sp. nov. and Flavobacterium urocaniciphilum sp. nov., isolated from a wastewater treatment plant, and emended descriptions of Flavobacterium caeni and Flavobacterium terrigena.Fujii D, Nagai F, Watanabe Y, Shirasawa YInt J Syst Evol Microbiol10.1099/ijs.0.054312-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Japan, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Vitamin K 2/analogs & derivatives/chemistry, Waste Water/*microbiologyGenetics
Phylogeny33040181Flavobacterium agri sp. nov., a novel bacterial species isolated from rhizospheric soil of Coriandrum sativum.Akter S, Lee SY, Moon B, Huq MAArch Microbiol10.1007/s00203-020-02068-72020Base Composition, Coriandrum/microbiology, Flavobacterium/chemistry/*classification/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity
Phylogeny35348449Flavobacterium selenitireducens sp. nov., isolated from rhizosphere soil of ancient mulberry.Hou X, Li S, Mao S, Mu W, Guo B, Wei S, Huang M, Zhao Y, Deng H, Sang F, Chen Z, Liu H, Liu AInt J Syst Evol Microbiol10.1099/ijsem.0.0053042022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Flavobacterium, *Morus/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, SoilTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20572Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27077Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27077)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87999Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402787.1
120653Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111716Collection of Institut Pasteur (CIP 111716)