Strain identifier

BacDive ID: 24025

Type strain: Yes

Species: Flavobacterium longum

Strain history: D. Fujii strain 75 (=YIT 12745).

NCBI tax ID(s): 1299340 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20572

BacDive-ID: 24025

DSM-Number: 27077

keywords: mesophilic, Bacteria, 16S sequence

description: Flavobacterium longum DSM 27077 is a mesophilic bacterium that was isolated from sludge from wastewater treatment plant associated with a facility, that produces a fermented milk drink.

NCBI tax id

  • NCBI tax id: 1299340
  • Matching level: species

strain history

doi: 10.13145/bacdive24025.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium longum
  • full scientific name: Flavobacterium longum Fujii et al. 2014

@ref: 20572

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium longum

full scientific name: Flavobacterium longum Fujii et al. 2014

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 20572
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20572positivegrowth25mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20572sludge from wastewater treatment plant associated with a facility, that produces a fermented milk drinkSaga Prefecture, Yakult Honsha Co. Ltd.JapanJPNAsia
67770Sludge from a wastewater treatment plant in Saga Pref.JapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production
#Engineered#Waste#Water treatment plant
#Environmental#Terrestrial#Mud (Sludge)
#Host Body Product#Fluids#Milk

Safety information

risk assessment

  • @ref: 20572
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20572
  • description: Flavobacterium longum gene for 16S ribosomal RNA, partial sequence
  • accession: AB795014
  • length: 1468
  • database: ena
  • NCBI tax ID: 1299340

GC content

@refGC-contentmethod
2057248.7high performance liquid chromatography (HPLC)
6777048.4-49high performance liquid chromatography (HPLC)

External links

@ref: 20572

culture collection no.: DSM 27077, JCM 19141, YIT 12745

straininfo link

@refpassport
20218http://www.straininfo.net/strains/896375
20218http://www.straininfo.net/strains/896374

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24453232Flavobacterium longum sp. nov. and Flavobacterium urocaniciphilum sp. nov., isolated from a wastewater treatment plant, and emended descriptions of Flavobacterium caeni and Flavobacterium terrigena.Fujii D, Nagai F, Watanabe Y, Shirasawa YInt J Syst Evol Microbiol10.1099/ijs.0.054312-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Japan, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Vitamin K 2/analogs & derivatives/chemistry, Waste Water/*microbiologyGenetics
Phylogeny33040181Flavobacterium agri sp. nov., a novel bacterial species isolated from rhizospheric soil of Coriandrum sativum.Akter S, Lee SY, Moon B, Huq MAArch Microbiol10.1007/s00203-020-02068-72020Base Composition, Coriandrum/microbiology, Flavobacterium/chemistry/*classification/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity
Phylogeny35348449Flavobacterium selenitireducens sp. nov., isolated from rhizosphere soil of ancient mulberry.Hou X, Li S, Mao S, Mu W, Guo B, Wei S, Huang M, Zhao Y, Deng H, Sang F, Chen Z, Liu H, Liu AInt J Syst Evol Microbiol10.1099/ijsem.0.0053042022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Flavobacterium, *Morus/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, SoilTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
20572Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27077Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27077)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/