Strain identifier
BacDive ID: 24019
Type strain: 
Species: Flavobacterium thermophilum
Strain Designation: G-21
Strain history: <- CCUG <- NCTC <- M. Kocur, CCM <- L. G. Loginova, Winogradski Inst. Microbiol., RAS, Moscow, Russia. The original description (5564) indicates that this organism should not be placed in the genus Flavobacterium. It would appear that this organism is an Anoxybacillus sp. This organism should not be confused with the strain of "Flavobacterium thermophilum" (658) held as DSM 579 = Thermus thermophilus
NCBI tax ID(s): 1414643 (species)
General
@ref: 20567
BacDive-ID: 24019
DSM-Number: 19814
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, thermophilic, Gram-positive
description: Flavobacterium thermophilum G-21 is an aerobe, spore-forming, thermophilic bacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 1414643
- Matching level: species
strain history
- @ref: 20567
- history: <- CCUG <- NCTC <- M. Kocur, CCM <- L. G. Loginova, Winogradski Inst. Microbiol., RAS, Moscow, Russia. The original description (5564) indicates that this organism should not be placed in the genus Flavobacterium. It would appear that this organism is an Anoxybacillus sp. This organism should not be confused with the strain of "Flavobacterium thermophilum" (658) held as DSM 579 = Thermus thermophilus
doi: 10.13145/bacdive24019.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium thermophilum
- full scientific name: Flavobacterium thermophilum Loginova and Egorova 1982
@ref: 20567
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium thermophilum
full scientific name: Flavobacterium thermophilum Loginova and Egorova 1982
strain designation: G-21
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
colony morphology
- @ref: 47634
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 20567
- name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
- growth: yes
- link: https://mediadive.dsmz.de/medium/545
- composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 20567 | positive | growth | 45 | thermophilic | |
| 47634 | positive | growth | 42-56 | thermophilic | |
| 69480 | thermophilic | 99.7 |
Physiology and metabolism
oxygen tolerance
- @ref: 47634
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 20567 | hot spring | Kazakhstan, near Alma-Ata | |||
| 47634 | Hot spring | near Alma-Ata | Kazakhstan | KAZ | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_3885.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_465;97_1979;98_2434;99_3885&stattab=map
- Last taxonomy: Anoxybacillus
- 16S sequence: HF558369
- Sequence Identity:
- Total samples: 2028
- soil counts: 183
- aquatic counts: 335
- animal counts: 1423
- plant counts: 87
Safety information
risk assessment
- @ref: 20567
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20567
- description: [Flavobacterium] thermophilum partial 16S rRNA gene, type strain CCUG 22402T
- accession: HF558369
- length: 1529
- database: ena
- NCBI tax ID: 1414643
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | [Flavobacterium] thermophilum NCTC11526 | GCA_900450595 | contig | ncbi | 1414643 |
| 66792 | [Flavobacterium] thermophilum strain NCTC11526 | 1414643.3 | wgs | patric | 1414643 |
| 66792 | Flavobacterium thermophilum NCTC 11526 | 2831987924 | draft | img | 1414643 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 88.83 | no |
| gram-positive | yes | 86.744 | no |
| anaerobic | no | 96.639 | yes |
| halophile | no | 95.39 | no |
| spore-forming | yes | 97 | no |
| thermophile | yes | 99.998 | yes |
| glucose-util | yes | 89.231 | no |
| aerobic | yes | 84.999 | no |
| flagellated | yes | 90.32 | no |
| glucose-ferment | no | 90.366 | no |
External links
@ref: 20567
culture collection no.: DSM 19814, BKM 1325, CCM 3496, CCUG 22402, NCTC 11526, VKM 1325
straininfo link
- @ref: 87993
- straininfo: 54009
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20567 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19814 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19814) | |
| 47634 | Curators of the CCUG | https://www.ccug.se/strain?id=22402 | Culture Collection University of Gothenburg (CCUG) (CCUG 22402) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 87993 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID54009.1 |