Strain identifier

BacDive ID: 24007

Type strain: No

Species: Acetobacterium carbinolicum

Strain Designation: SyrA5

Strain history: <- K. Finster, Århus Univ., Denmark; SyrA5 <- M. Paarup {2003}

NCBI tax ID(s): 346376 (subspecies)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20231

BacDive-ID: 24007

DSM-Number: 16427

keywords: mesophilic, anaerobe, Bacteria, 16S sequence

description: Acetobacterium carbinolicum SyrA5 is an anaerobe, mesophilic bacterium that was isolated from anoxic black sediment from the brackish part of a estuary.

NCBI tax id

  • NCBI tax id: 346376
  • Matching level: subspecies

strain history: <- K. Finster, Århus Univ., Denmark; SyrA5 <- M. Paarup {2003}

doi: 10.13145/bacdive24007.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Eubacteriales
  • family: Eubacteriaceae
  • genus: Acetobacterium
  • species: Acetobacterium carbinolicum
  • full scientific name: Acetobacterium carbinolicum Eichler and Schink 1985

@ref: 20231

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Acetobacterium

species: Acetobacterium carbinolicum

full scientific name: Acetobacterium carbinolicum Eichler and Schink 1985 emend. Paarup et al. 2006

strain designation: SyrA5

type strain: no

Morphology

colony morphology

  • @ref: 20231
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 20231
  • name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/135
  • composition: Name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135) Composition: NaHCO3 10.0 g/l D-Fructose 10.0 g/l Yeast extract 2.0 g/l NH4Cl 1.0 g/l Na2S x 9 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l K2HPO4 0.45 g/l KH2PO4 0.33 g/l MgSO4 x 7 H2O 0.06 g/l Nitrilotriacetic acid 0.03 g/l NaCl 0.02 g/l MnSO4 x H2O 0.01 g/l ZnSO4 x 7 H2O 0.0036 g/l CoSO4 x 7 H2O 0.0036 g/l FeSO4 x 7 H2O 0.002 g/l CaCl2 x 2 H2O 0.002 g/l NiCl2 x 6 H2O 0.0006 g/l Sodium resazurin 0.0005 g/l AlK(SO4)2 x 12 H2O 0.0004 g/l CuSO4 x 5 H2O 0.0002 g/l H3BO3 0.0002 g/l Na2MoO4 x 2 H2O 0.0002 g/l Pyridoxine hydrochloride 0.0001 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l (±)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Thiamine HCl 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 8e-06 g/l Na2SeO3 x 5 H2O 6e-06 g/l Vitamin B12 1e-06 g/l Distilled water

culture temp

  • @ref: 20231
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 20231
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 20231
  • sample type: anoxic black sediment from the brackish part of a estuary
  • geographic location: Kysing Fjord
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Brackish
#Environmental#Aquatic#Estuary
#Environmental#Aquatic#Sediment
#Condition#Anoxic (anaerobic)

Safety information

risk assessment

  • @ref: 20231
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20231
  • description: Acetobacterium carbinolicum subsp. kysingense strain SyrA5 16S ribosomal RNA gene, partial sequence
  • accession: AY744449
  • length: 1433
  • database: ena
  • NCBI tax ID: 346376

GC content

  • @ref: 20231
  • GC-content: 44.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 20231

culture collection no.: DSM 16427, ATCC BAA 990

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/493510

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
20231Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-16427Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16427)