Strain identifier

BacDive ID: 24007

Type strain: No

Species: Acetobacterium carbinolicum subsp. kysingense

Strain Designation: SyrA5

Strain history: <- K. Finster, Århus Univ., Denmark; SyrA5 <- M. Paarup {2003}

NCBI tax ID(s): 346376 (subspecies)

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General

@ref: 20231

BacDive-ID: 24007

DSM-Number: 16427

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Acetobacterium carbinolicum subsp. kysingense SyrA5 is an anaerobe, mesophilic bacterium that was isolated from anoxic black sediment from the brackish part of a estuary.

NCBI tax id

  • NCBI tax id: 346376
  • Matching level: subspecies

strain history

  • @ref: 20231
  • history: <- K. Finster, Århus Univ., Denmark; SyrA5 <- M. Paarup {2003}

doi: 10.13145/bacdive24007.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Eubacteriaceae
  • genus: Acetobacterium
  • species: Acetobacterium carbinolicum subsp. kysingense
  • full scientific name: Acetobacterium carbinolicum subsp. kysingense Paarup et al. 2006

@ref: 20231

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Acetobacterium

species: Acetobacterium carbinolicum

full scientific name: Acetobacterium carbinolicum Eichler and Schink 1985 emend. Paarup et al. 2006

strain designation: SyrA5

type strain: no

Morphology

colony morphology

  • @ref: 20231
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 20231
  • name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/135
  • composition: Name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135) Composition: NaHCO3 9.79432 g/l D-Fructose 9.79432 g/l Yeast extract 1.95886 g/l NH4Cl 0.979432 g/l Na2S x 9 H2O 0.489716 g/l L-Cysteine HCl x H2O 0.489716 g/l K2HPO4 0.440744 g/l KH2PO4 0.323213 g/l MgSO4 x 7 H2O 0.0587659 g/l Nitrilotriacetic acid 0.029383 g/l NaCl 0.0195886 g/l MnSO4 x H2O 0.00979432 g/l ZnSO4 x 7 H2O 0.00352595 g/l CoSO4 x 7 H2O 0.00352595 g/l FeSO4 x 7 H2O 0.00195886 g/l CaCl2 x 2 H2O 0.00195886 g/l NiCl2 x 6 H2O 0.000587659 g/l Sodium resazurin 0.000489716 g/l AlK(SO4)2 x 12 H2O 0.000391773 g/l CuSO4 x 5 H2O 0.000195886 g/l H3BO3 0.000195886 g/l Na2MoO4 x 2 H2O 0.000195886 g/l Pyridoxine hydrochloride 9.79432e-05 g/l Calcium D-(+)-pantothenate 4.89716e-05 g/l Nicotinic acid 4.89716e-05 g/l Riboflavin 4.89716e-05 g/l (DL)-alpha-Lipoic acid 4.89716e-05 g/l p-Aminobenzoic acid 4.89716e-05 g/l Thiamine HCl 4.89716e-05 g/l Folic acid 1.95886e-05 g/l Biotin 1.95886e-05 g/l Na2WO4 x 2 H2O 7.83546e-06 g/l Na2SeO3 x 5 H2O 5.87659e-06 g/l Vitamin B12 9.79432e-07 g/l Distilled water

culture temp

  • @ref: 20231
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 20231
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 20231
  • sample type: anoxic black sediment from the brackish part of a estuary
  • geographic location: Kysing Fjord
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Brackish
#Environmental#Aquatic#Estuary
#Environmental#Aquatic#Sediment
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_29260.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_30;96_1134;97_1330;98_1608;99_29260&stattab=map
  • Last taxonomy: Acetobacterium
  • 16S sequence: AY744449
  • Sequence Identity:
  • Total samples: 29
  • soil counts: 8
  • aquatic counts: 21

Safety information

risk assessment

  • @ref: 20231
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20231
  • description: Acetobacterium carbinolicum subsp. kysingense strain SyrA5 16S ribosomal RNA gene, partial sequence
  • accession: AY744449
  • length: 1433
  • database: ena
  • NCBI tax ID: 346376

GC content

  • @ref: 20231
  • GC-content: 44.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 20231

culture collection no.: DSM 16427, ATCC BAA 990

literature

  • topic: Phylogeny
  • Pubmed-ID: 16344912
  • title: Characterization of the psychrotolerant acetogen strain SyrA5 and the emended description of the species Acetobacterium carbinolicum.
  • authors: Paarup M, Friedrich MW, Tindall BJ, Finster K
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-005-9009-y
  • year: 2005
  • mesh: Acetobacterium/*classification/genetics/isolation & purification/*metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, Denmark, Geologic Sediments/microbiology, Microscopy, Electron, Phenotype, Phylogeny, Species Specificity
  • topic2: Phenotype

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20231Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-16427Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16427)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/