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Strain identifier

BacDive ID: 24006

Type strain: Yes

Species: Dielma fastidiosa

Strain Designation: JC13

Strain history: <- G. Laguerre, Timone Hospital, Marseille, France; JC13 <- J.-C. Lagier

NCBI tax ID(s): 1034346 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21310

BacDive-ID: 24006

DSM-Number: 26099

keywords: anaerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Dielma fastidiosa JC13 is an anaerobe, mesophilic bacterium that was isolated from human feces.

NCBI tax id

  • NCBI tax id: 1034346
  • Matching level: species

strain history: <- G. Laguerre, Timone Hospital, Marseille, France; JC13 <- J.-C. Lagier

doi: 10.13145/bacdive24006.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Erysipelotrichia
  • order: Erysipelotrichales
  • family: Erysipelotrichaceae
  • genus: Dielma
  • species: Dielma fastidiosa
  • full scientific name: Dielma fastidiosa Ramasamy et al. 2016

@ref: 21310

domain: Bacteria

phylum: Firmicutes

class: Erysipelotrichia

order: Erysipelotrichales

family: Erysipelotrichaceae

genus: Dielma

species: Dielma fastidiosa

full scientific name: Dielma fastidiosa Ramasamy et al. 2016

strain designation: JC13

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21310
  • name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/110
  • composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l NaOH Vitamin K1 Distilled water

culture temp

  • @ref: 21310
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 21310
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 21310
  • sample type: human feces
  • geographic location: Guinean-Sudanian Zone, Dielmo
  • country: Senegal
  • origin.country: SEN
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 21310
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21310
  • description: Dielma fastidiosa strain JC13 16S ribosomal RNA gene, partial sequence
  • accession: JF824807
  • length: 1499
  • database: ena
  • NCBI tax ID: 1034346

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Dielma fastidiosa JC13GCA_000313565scaffoldncbi1034346
66792Dielma fastidiosa DSM 260992770939561draftimg1034346

GC content

  • @ref: 21310
  • GC-content: 40.0
  • method: sequence analysis

External links

@ref: 21310

culture collection no.: DSM 26099, CSUR P149

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21310Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26099Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26099)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880