Strain identifier
BacDive ID: 23990
Type strain:
Species: Cronobacter condimenti
Strain Designation: 1330
Strain history: <- LMG <- M. J. Figueras, Rovira i Virgili University, Reus, Spain <- S. J. Forsythe, Nottingham Trent University <- I. Turcovsky
NCBI tax ID(s): 1073999 (strain), 1163710 (species)
General
@ref: 21153
BacDive-ID: 23990
DSM-Number: 27966
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped
description: Cronobacter condimenti 1330 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from spiced meat.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1073999 | strain |
1163710 | species |
strain history
- @ref: 21153
- history: <- LMG <- M. J. Figueras, Rovira i Virgili University, Reus, Spain <- S. J. Forsythe, Nottingham Trent University <- I. Turcovsky
doi: 10.13145/bacdive23990.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Cronobacter
- species: Cronobacter condimenti
- full scientific name: Cronobacter condimenti Joseph et al. 2012
@ref: 21153
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Cronobacter
species: Cronobacter condimenti
full scientific name: Cronobacter condimenti Joseph et al. 2012
strain designation: 1330
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
30278 | negative | rod-shaped | no | |
69480 | yes | 95.76 | ||
69480 | negative | 99.908 |
pigmentation
- @ref: 30278
- production: yes
multimedia
- @ref: 21153
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27966.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21153
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21153 | positive | growth | 37 | mesophilic |
30278 | positive | optimum | 37 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
30278 | no | |
69481 | no | 100 |
69480 | no | 99.603 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30278 | 16947 | citrate | + | carbon source |
30278 | 15792 | malonate | + | carbon source |
30278 | 18257 | ornithine | + | carbon source |
30278 | 17632 | nitrate | + | reduction |
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | + | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | + | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
30278 | 35581 | indole | yes |
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test |
---|---|---|---|---|
30278 | 35581 | indole | + | |
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30278 | catalase | + | 1.11.1.6 |
30278 | gelatinase | + | |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21153 | + | + | - | + | + | - | - | - | + | + | - | + | + | + | - | + | + | + | + | + | - |
21153 | + | + | - | + | + | - | - | - | + | + | - | + | + | + | - | + | + | + | + | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 21153
- sample type: spiced meat
- country: Slovakia
- origin.country: SVK
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Meat
Safety information
risk assessment
- @ref: 21153
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21153
- description: Cronobacter condimenti 1330 partial 16S rRNA gene, type strain 1330
- accession: FN539031
- length: 1413
- database: ena
- NCBI tax ID: 1073999
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Cronobacter condimenti 1330 LMG 26250 | GCA_001277255 | complete | ncbi | 1073999 |
66792 | Cronobacter condimenti 1330 | GCA_000319285 | contig | ncbi | 1073999 |
66792 | Cronobacter condimenti 1330 | 1073999.4 | wgs | patric | 1073999 |
66792 | Cronobacter condimenti 1330 strain LMG 26250 | 1073999.11 | plasmid | patric | 1073999 |
66792 | Cronobacter condimenti 1330 strain LMG 26250 | 1073999.7 | complete | patric | 1073999 |
66792 | Cronobacter condimenti 1330 | 2534681767 | draft | img | 1073999 |
66792 | Cronobacter condimenti LMG 26250 | 2806310696 | complete | img | 1073999 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 91.763 | no |
flagellated | no | 81.327 | yes |
gram-positive | no | 97.885 | yes |
anaerobic | no | 96.247 | no |
halophile | no | 76.833 | no |
spore-forming | no | 93.611 | yes |
thermophile | no | 99.31 | yes |
glucose-util | yes | 96.097 | no |
aerobic | yes | 77.946 | no |
glucose-ferment | yes | 92.371 | yes |
External links
@ref: 21153
culture collection no.: DSM 27966, CECT 7863, LMG 26250
straininfo link
- @ref: 87965
- straininfo: 375112
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22661070 | Cronobacter condimenti sp. nov., isolated from spiced meat, and Cronobacter universalis sp. nov., a species designation for Cronobacter sp. genomospecies 1, recovered from a leg infection, water and food ingredients. | Joseph S, Cetinkaya E, Drahovska H, Levican A, Figueras MJ, Forsythe SJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.032292-0 | 2011 | Child, Cronobacter/*classification/genetics/*isolation & purification, DNA, Bacterial/genetics, Enterobacteriaceae Infections/*microbiology, *Food Microbiology, Humans, Leg/*microbiology, Male, Meat Products/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Slovakia, *Water Microbiology | Biotechnology |
Phylogeny | 28086074 | Mangrovibacter phragmitis sp. nov., an endophyte isolated from the roots of Phragmites karka. | Behera P, Venkata Ramana V, Maharana B, Joseph N, Vaishampayan P, Singh NK, Shouche Y, Bhadury P, Mishra SR, Raina V, Suar M, Pattnaik AK, Rastogi G | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001789 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Endophytes/classification/genetics/isolation & purification, Enterobacteriaceae/*classification/genetics/isolation & purification, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Enzymology |
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21153 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27966 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27966) | |||
30278 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26619 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
68368 | Automatically annotated from API 20E | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
87965 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID375112.1 |