Strain identifier

BacDive ID: 23990

Type strain: Yes

Species: Cronobacter condimenti

Strain Designation: 1330

Strain history: <- LMG <- M. J. Figueras, Rovira i Virgili University, Reus, Spain <- S. J. Forsythe, Nottingham Trent University <- I. Turcovsky

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21153

BacDive-ID: 23990

DSM-Number: 27966

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Cronobacter condimenti 1330 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from spiced meat.

NCBI tax id

NCBI tax idMatching level
1073999strain
1163710species

strain history

  • @ref: 21153
  • history: <- LMG <- M. J. Figueras, Rovira i Virgili University, Reus, Spain <- S. J. Forsythe, Nottingham Trent University <- I. Turcovsky

doi: 10.13145/bacdive23990.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Cronobacter
  • species: Cronobacter condimenti
  • full scientific name: Cronobacter condimenti Joseph et al. 2012

@ref: 21153

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Cronobacter

species: Cronobacter condimenti

full scientific name: Cronobacter condimenti Joseph et al. 2012

strain designation: 1330

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
30278negativerod-shapedno
69480yes95.76
69480negative99.908

pigmentation

  • @ref: 30278
  • production: yes

multimedia

  • @ref: 21153
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27966.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 21153
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21153positivegrowth37mesophilic
30278positiveoptimum37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
30278no
69481no100
69480no99.603

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3027816947citrate+carbon source
3027815792malonate+carbon source
3027818257ornithine+carbon source
3027817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
3027835581indoleyes
6836815688acetoinyes
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
3027835581indole+
6836815688acetoin+
6836835581indole+

enzymes

@refvalueactivityec
30278catalase+1.11.1.6
30278gelatinase+
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
21153++-++---++-+++-+++++-
21153++-++---++-+++-+++++-

Isolation, sampling and environmental information

isolation

  • @ref: 21153
  • sample type: spiced meat
  • country: Slovakia
  • origin.country: SVK
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Meat

Safety information

risk assessment

  • @ref: 21153
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21153
  • description: Cronobacter condimenti 1330 partial 16S rRNA gene, type strain 1330
  • accession: FN539031
  • length: 1413
  • database: ena
  • NCBI tax ID: 1073999

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cronobacter condimenti 1330 LMG 26250GCA_001277255completencbi1073999
66792Cronobacter condimenti 1330GCA_000319285contigncbi1073999
66792Cronobacter condimenti 13301073999.4wgspatric1073999
66792Cronobacter condimenti 1330 strain LMG 262501073999.11plasmidpatric1073999
66792Cronobacter condimenti 1330 strain LMG 262501073999.7completepatric1073999
66792Cronobacter condimenti 13302534681767draftimg1073999
66792Cronobacter condimenti LMG 262502806310696completeimg1073999

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.763no
flagellatedno81.327yes
gram-positiveno97.885yes
anaerobicno96.247no
halophileno76.833no
spore-formingno93.611yes
thermophileno99.31yes
glucose-utilyes96.097no
aerobicyes77.946no
glucose-fermentyes92.371yes

External links

@ref: 21153

culture collection no.: DSM 27966, CECT 7863, LMG 26250

straininfo link

  • @ref: 87965
  • straininfo: 375112

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22661070Cronobacter condimenti sp. nov., isolated from spiced meat, and Cronobacter universalis sp. nov., a species designation for Cronobacter sp. genomospecies 1, recovered from a leg infection, water and food ingredients.Joseph S, Cetinkaya E, Drahovska H, Levican A, Figueras MJ, Forsythe SJInt J Syst Evol Microbiol10.1099/ijs.0.032292-02011Child, Cronobacter/*classification/genetics/*isolation & purification, DNA, Bacterial/genetics, Enterobacteriaceae Infections/*microbiology, *Food Microbiology, Humans, Leg/*microbiology, Male, Meat Products/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Slovakia, *Water MicrobiologyBiotechnology
Phylogeny28086074Mangrovibacter phragmitis sp. nov., an endophyte isolated from the roots of Phragmites karka.Behera P, Venkata Ramana V, Maharana B, Joseph N, Vaishampayan P, Singh NK, Shouche Y, Bhadury P, Mishra SR, Raina V, Suar M, Pattnaik AK, Rastogi GInt J Syst Evol Microbiol10.1099/ijsem.0.0017892017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Endophytes/classification/genetics/isolation & purification, Enterobacteriaceae/*classification/genetics/isolation & purification, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAEnzymology

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21153Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27966Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27966)
30278Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172661928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87965Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID375112.1