Strain identifier
BacDive ID: 23989
Type strain:
Species: Yersinia wautersii
Strain Designation: 12-219N1
Strain history: CIP <- 2013, C. Savin, Inst. Pasteur, Paris, France <- Shimane Prefectural Inst. of Public Healt & Environm. Science, Nishihamasada, Matsue, Japon: strain 12-219N1
NCBI tax ID(s): 1341643 (species)
General
@ref: 20922
BacDive-ID: 23989
DSM-Number: 27350
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Yersinia wautersii 12-219N1 is a mesophilic, Gram-negative, motile bacterium that was isolated from human.
NCBI tax id
- NCBI tax id: 1341643
- Matching level: species
strain history
@ref | history |
---|---|
20922 | <- C. Savin, CIP; 12-219N1 <- Shimane Pref. Inst. of Public Health and Environmental Sciences, Matsue, Japan |
123915 | CIP <- 2013, C. Savin, Inst. Pasteur, Paris, France <- Shimane Prefectural Inst. of Public Healt & Environm. Science, Nishihamasada, Matsue, Japon: strain 12-219N1 |
doi: 10.13145/bacdive23989.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Yersiniaceae
- genus: Yersinia
- species: Yersinia wautersii
- full scientific name: Yersinia wautersii Savin et al. 2014
@ref: 20922
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Yersiniaceae
genus: Yersinia
species: Yersinia wautersii
full scientific name: Yersinia wautersii Savin et al. 2014
strain designation: 12-219N1
type strain: yes
Morphology
cell morphology
- @ref: 123915
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
multimedia
- @ref: 20922
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27350.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
36210 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
20922 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | https://mediadive.dsmz.de/medium/535 |
123915 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20922 | positive | growth | 28 | mesophilic |
36210 | positive | growth | 30 | mesophilic |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | + | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123915 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20922 | + | + | - | - | - | - | + | - | - | - | - | + | + | - | - | + | - | + | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
20922 | human | Republic of Korea | KOR | Asia | |
123915 | Human, Human stools | Republic of Korea | KOR | Asia | 1993 |
isolation source categories
- Cat1: #Host
- Cat2: #Human
taxonmaps
- @ref: 69479
- File name: preview.99_140.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_106;97_113;98_124;99_140&stattab=map
- Last taxonomy: Yersiniaceae
- 16S sequence: HG326166
- Sequence Identity:
- Total samples: 33336
- soil counts: 1734
- aquatic counts: 5584
- animal counts: 23907
- plant counts: 2111
Safety information
risk assessment
- @ref: 123915
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 20922
- description: Yersinia wautersii partial 16S rRNA gene, type strain 12-219N1T
- accession: HG326166
- length: 1476
- database: ena
- NCBI tax ID: 1341643
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Yersinia wautersii 12-219N1 | GCA_000493435 | scaffold | ncbi | 1341643 |
66792 | Yersinia wautersii 12-219N1 | 2636416087 | draft | img | 1341643 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 90.927 | no |
flagellated | no | 58.797 | no |
gram-positive | no | 98.517 | no |
anaerobic | no | 97.159 | no |
aerobic | yes | 73.991 | no |
halophile | no | 87.143 | no |
spore-forming | no | 95.396 | no |
thermophile | no | 98.322 | yes |
glucose-util | yes | 94.292 | no |
glucose-ferment | yes | 89.936 | yes |
External links
@ref: 20922
culture collection no.: DSM 27350, CIP 110607
straininfo link
- @ref: 87964
- straininfo: 397397
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20922 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27350 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27350) | |
36210 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/30409 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68368 | Automatically annotated from API 20E | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
87964 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397397.1 | |
123915 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110607 | Collection of Institut Pasteur (CIP 110607) |