Strain identifier
BacDive ID: 23980
Type strain:
Species: Yersinia enterocolitica subsp. enterocolitica
Strain Designation: W22703pYV-, W22703pYV-
Strain history: <- T. M. Fuchs, Department Biowissenschaften, Wissenschaftszentrum Weihenstephan, Technische Universitaet Muenchen <- R. L. Goverde, Faculty of Veterinary Medicine, University of Utrecht <- G. Cornelis, Université de Louvain, Bruxelles, Belgium <- G. Wauters, Université de Louvain, Belgium
NCBI tax ID(s): 150052 (subspecies)
General
@ref: 20920
BacDive-ID: 23980
DSM-Number: 28012
keywords: Bacteria, mesophilic
description: Yersinia enterocolitica subsp. enterocolitica W22703pYV- is a mesophilic bacterium that was isolated from human?.
NCBI tax id
- NCBI tax id: 150052
- Matching level: subspecies
strain history
- @ref: 20920
- history: <- T. M. Fuchs, Department Biowissenschaften, Wissenschaftszentrum Weihenstephan, Technische Universitaet Muenchen <- R. L. Goverde, Faculty of Veterinary Medicine, University of Utrecht <- G. Cornelis, Université de Louvain, Bruxelles, Belgium <- G. Wauters, Université de Louvain, Belgium
doi: 10.13145/bacdive23980.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Yersiniaceae
- genus: Yersinia
- species: Yersinia enterocolitica subsp. enterocolitica
- full scientific name: Yersinia enterocolitica subsp. enterocolitica (Schleifstein and Coleman 1939) Neubauer et al. 2000
@ref: 20920
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Yersiniaceae
genus: Yersinia
species: Yersinia enterocolitica subsp. enterocolitica
full scientific name: Yersinia enterocolitica subsp. enterocolitica (Schleifstein and Coleman 1939) Neubauer et al. 2000
strain designation: W22703pYV-, W22703pYV-
type strain: no
Morphology
multimedia
- @ref: 20920
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28012.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 20920
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 20920
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | + | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
68372 | 17754 | glycerol | + | assimilation |
68372 | 17113 | erythritol | - | assimilation |
68372 | 17108 | D-arabinose | - | assimilation |
68372 | 30849 | L-arabinose | + | assimilation |
68372 | 16988 | D-ribose | + | assimilation |
68372 | 65327 | D-xylose | + | assimilation |
68372 | 65328 | L-xylose | - | assimilation |
68372 | 15963 | ribitol | - | assimilation |
68372 | 74863 | methyl beta-D-xylopyranoside | - | assimilation |
68372 | 12936 | D-galactose | + | assimilation |
68372 | 17634 | D-glucose | + | assimilation |
68372 | 15824 | D-fructose | + | assimilation |
68372 | 16024 | D-mannose | + | assimilation |
68372 | 17266 | L-sorbose | + | assimilation |
68372 | 62345 | L-rhamnose | - | assimilation |
68372 | 16813 | galactitol | - | assimilation |
68372 | 17268 | myo-inositol | + | assimilation |
68372 | 16899 | D-mannitol | + | assimilation |
68372 | 30911 | sorbitol | + | assimilation |
68372 | 43943 | methyl alpha-D-mannoside | - | assimilation |
68372 | 320061 | methyl alpha-D-glucopyranoside | - | assimilation |
68372 | 59640 | N-acetylglucosamine | + | assimilation |
68372 | 27613 | amygdalin | - | assimilation |
68372 | 18305 | arbutin | + | assimilation |
68372 | 4853 | esculin | + | assimilation |
68372 | 17814 | salicin | - | assimilation |
68372 | 17057 | cellobiose | + | assimilation |
68372 | 17306 | maltose | + | assimilation |
68372 | 17716 | lactose | - | assimilation |
68372 | 28053 | melibiose | - | assimilation |
68372 | 17992 | sucrose | + | assimilation |
68372 | 27082 | trehalose | + | assimilation |
68372 | 15443 | inulin | - | assimilation |
68372 | 6731 | melezitose | - | assimilation |
68372 | 16634 | raffinose | - | assimilation |
68372 | 28017 | starch | - | assimilation |
68372 | 28087 | glycogen | - | assimilation |
68372 | 17151 | xylitol | - | assimilation |
68372 | 28066 | gentiobiose | + | assimilation |
68372 | 32528 | turanose | - | assimilation |
68372 | 62318 | D-lyxose | - | assimilation |
68372 | 16443 | D-tagatose | - | assimilation |
68372 | 28847 | D-fucose | - | assimilation |
68372 | 18287 | L-fucose | - | assimilation |
68372 | 18333 | D-arabitol | - | assimilation |
68372 | 18403 | L-arabitol | - | assimilation |
68372 | 24265 | gluconate | + | assimilation |
68372 | Potassium 2-ketogluconate | - | assimilation | |
68372 | Potassium 5-ketogluconate | - | assimilation |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20920 | + | - | - | + | - | - | + | - | + | + | - | + | + | + | + | - | + | - | + | + | - |
API 50CHas
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20920 | - | + | - | - | + | + | + | - | - | - | + | + | + | + | + | - | - | + | + | + | - | - | + | - | + | + | - | + | + | - | - | + | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 20920
- sample type: human?
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Human
Safety information
risk assessment
- @ref: 20920
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
External links
@ref: 20920
culture collection no.: DSM 28012
straininfo link
- @ref: 87962
- straininfo: 407341
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20920 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28012 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28012) | |
68368 | Automatically annotated from API 20E | |||
68372 | Automatically annotated from API 50CH assim | |||
87962 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407341.1 |