Strain identifier

BacDive ID: 23910

Type strain: No

Species: Klebsiella aerogenes

Strain history: <- Bayer AG; ICB 5240

NCBI tax ID(s): 548 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 20539

BacDive-ID: 23910

DSM-Number: 12058

keywords: genome sequence, Bacteria, mesophilic, motile, human pathogen

description: Klebsiella aerogenes DSM 12058 is a mesophilic, motile human pathogen that was isolated from clinical specimen.

NCBI tax id

  • NCBI tax id: 548
  • Matching level: species

strain history

  • @ref: 20539
  • history: <- Bayer AG; ICB 5240

doi: 10.13145/bacdive23910.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella aerogenes
  • full scientific name: Klebsiella aerogenes (Hormaeche and Edwards 1960) Tindall et al. 2017
  • synonyms

    @refsynonym
    20215Klebsiella mobilis
    20215Enterobacter aerogenes

@ref: 20539

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella aerogenes

full scientific name: Klebsiella aerogenes (Hormaeche and Edwards 1960) Tindall et al. 2017

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes97.667
6948099.974negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20539TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
20539COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 20539
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.601

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
20539+++++----+-+++++++++-

Isolation, sampling and environmental information

isolation

  • @ref: 20539
  • sample type: clinical specimen

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Specimen
#Infection#Medical environment#Clinic

Safety information

risk assessment

  • @ref: 20539
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Klebsiella aerogenes strain FDAARGOS 1441
  • accession: 548.863
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 548

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.184no
anaerobicno96.358no
halophileno90.047no
spore-formingno94.411no
glucose-utilyes94.672no
thermophileno99.139yes
aerobicyes78.044no
motileyes82.99no
flagellatedno69.924no
glucose-fermentyes92.169yes

External links

@ref: 20539

culture collection no.: DSM 12058, ICB 5240

straininfo link

  • @ref: 87920
  • straininfo: 113476

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20539Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-12058Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12058)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87920Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID113476.1