Strain identifier
BacDive ID: 23898
Type strain:
Species: Desulfocurvus thunnarius
Strain history: M.-L. Fardeau Olac 40.
NCBI tax ID(s): 1312905 (species)
General
@ref: 21203
BacDive-ID: 23898
DSM-Number: 26129
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Desulfocurvus thunnarius DSM 26129 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sludge from an anaerobic sequencing batch reactor treating tuna cooking wastewater.
NCBI tax id
- NCBI tax id: 1312905
- Matching level: species
strain history
@ref | history |
---|---|
21203 | <- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; Olac 40 <- O. Hamdi {2011} |
67770 | M.-L. Fardeau Olac 40. |
doi: 10.13145/bacdive23898.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Desulfocurvus
- species: Desulfocurvus thunnarius
- full scientific name: Desulfocurvus thunnarius Hamdi et al. 2013
@ref: 21203
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Desulfocurvus
species: Desulfocurvus thunnarius
full scientific name: Desulfocurvus thunnarius Hamdi et al. 2013
type strain: yes
Morphology
cell morphology
- @ref: 31087
- gram stain: negative
- cell length: 6 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 21203
- name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)
- growth: yes
- link: https://mediadive.dsmz.de/medium/641
- composition: Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641) Composition: Na-DL-lactate 2.49252 g/l Na2SO4 1.99402 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l Na2S2O3 x 5 H2O 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21203 | positive | growth | 37 | mesophilic |
31087 | positive | growth | 20-50 | |
31087 | positive | optimum | 40 | thermophilic |
67770 | positive | growth | 37 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31087 | positive | growth | 05-09 | alkaliphile |
31087 | positive | optimum | 7.1 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
21203 | anaerobe |
31087 | anaerobe |
spore formation
- @ref: 31087
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31087 | NaCl | positive | growth | 0-5 % |
31087 | NaCl | positive | optimum | 0.2 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31087 | 30089 | acetate | + | carbon source |
31087 | 15740 | formate | + | carbon source |
31087 | 24996 | lactate | + | carbon source |
31087 | 15361 | pyruvate | + | carbon source |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
21203 | sludge from an anaerobic sequencing batch reactor treating tuna cooking wastewater | INSAT Tunis | Tunisia | TUN | Africa |
67770 | Anaerobic sequencing batch reactor treating tuna cooking wastewater in Tunisia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Bioreactor | |
#Engineered | #Waste | #Wastewater |
#Environmental | #Terrestrial | #Mud (Sludge) |
#Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_178975.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5791;96_58776;97_76088;98_102637;99_178975&stattab=map
- Last taxonomy: Desulfocurvus thunnarius
- 16S sequence: KC513819
- Sequence Identity:
- Total samples: 156
- soil counts: 27
- aquatic counts: 121
- animal counts: 5
- plant counts: 3
Safety information
risk assessment
- @ref: 21203
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21203
- description: Desulfocurvus thunnarius strain Olac 40 16S ribosomal RNA gene, partial sequence
- accession: KC513819
- length: 1517
- database: ena
- NCBI tax ID: 1312905
GC content
@ref | GC-content | method |
---|---|---|
21203 | 70 | high performance liquid chromatography (HPLC) |
31087 | 70 |
External links
@ref: 21203
culture collection no.: DSM 26129, JCM 18546, Olac 40
straininfo link
- @ref: 87908
- straininfo: 405715
literature
- topic: Phylogeny
- Pubmed-ID: 23811135
- title: Isolation and characterization of Desulfocurvus thunnarius sp. nov., a sulfate-reducing bacterium isolated from an anaerobic sequencing batch reactor treating cooking wastewater.
- authors: Hamdi O, Ben Hania W, Postec A, Bartoli M, Hamdi M, Bouallagui H, Fauque G, Ollivier B, Fardeau ML
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.051664-0
- year: 2013
- mesh: Bacteria, Anaerobic/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bioreactors/microbiology, Cooking, DNA, Bacterial/genetics, Deltaproteobacteria/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sulfates/metabolism, Sulfites/metabolism, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification, Tunisia, Waste Water/*microbiology
- topic2: Enzymology
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21203 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26129 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26129) | |||
31087 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27416 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
87908 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405715.1 |