Strain identifier

BacDive ID: 23898

Type strain: Yes

Species: Desulfocurvus thunnarius

Strain history: M.-L. Fardeau Olac 40.

NCBI tax ID(s): 1312905 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21203

BacDive-ID: 23898

DSM-Number: 26129

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Desulfocurvus thunnarius DSM 26129 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sludge from an anaerobic sequencing batch reactor treating tuna cooking wastewater.

NCBI tax id

  • NCBI tax id: 1312905
  • Matching level: species

strain history

@refhistory
21203<- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; Olac 40 <- O. Hamdi {2011}
67770M.-L. Fardeau Olac 40.

doi: 10.13145/bacdive23898.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Desulfocurvus
  • species: Desulfocurvus thunnarius
  • full scientific name: Desulfocurvus thunnarius Hamdi et al. 2013

@ref: 21203

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Desulfocurvus

species: Desulfocurvus thunnarius

full scientific name: Desulfocurvus thunnarius Hamdi et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 31087
  • gram stain: negative
  • cell length: 6 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 21203
  • name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/641
  • composition: Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641) Composition: Na-DL-lactate 2.49252 g/l Na2SO4 1.99402 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l Na2S2O3 x 5 H2O 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21203positivegrowth37mesophilic
31087positivegrowth20-50
31087positiveoptimum40thermophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
31087positivegrowth05-09alkaliphile
31087positiveoptimum7.1

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
21203anaerobe
31087anaerobe

spore formation

  • @ref: 31087
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31087NaClpositivegrowth0-5 %
31087NaClpositiveoptimum0.2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3108730089acetate+carbon source
3108715740formate+carbon source
3108724996lactate+carbon source
3108715361pyruvate+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21203sludge from an anaerobic sequencing batch reactor treating tuna cooking wastewaterINSAT TunisTunisiaTUNAfrica
67770Anaerobic sequencing batch reactor treating tuna cooking wastewater in Tunisia

isolation source categories

Cat1Cat2Cat3
#Engineered#Bioreactor
#Engineered#Waste#Wastewater
#Environmental#Terrestrial#Mud (Sludge)
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_178975.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5791;96_58776;97_76088;98_102637;99_178975&stattab=map
  • Last taxonomy: Desulfocurvus thunnarius
  • 16S sequence: KC513819
  • Sequence Identity:
  • Total samples: 156
  • soil counts: 27
  • aquatic counts: 121
  • animal counts: 5
  • plant counts: 3

Safety information

risk assessment

  • @ref: 21203
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21203
  • description: Desulfocurvus thunnarius strain Olac 40 16S ribosomal RNA gene, partial sequence
  • accession: KC513819
  • length: 1517
  • database: ena
  • NCBI tax ID: 1312905

GC content

@refGC-contentmethod
2120370high performance liquid chromatography (HPLC)
3108770

External links

@ref: 21203

culture collection no.: DSM 26129, JCM 18546, Olac 40

straininfo link

  • @ref: 87908
  • straininfo: 405715

literature

  • topic: Phylogeny
  • Pubmed-ID: 23811135
  • title: Isolation and characterization of Desulfocurvus thunnarius sp. nov., a sulfate-reducing bacterium isolated from an anaerobic sequencing batch reactor treating cooking wastewater.
  • authors: Hamdi O, Ben Hania W, Postec A, Bartoli M, Hamdi M, Bouallagui H, Fauque G, Ollivier B, Fardeau ML
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.051664-0
  • year: 2013
  • mesh: Bacteria, Anaerobic/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bioreactors/microbiology, Cooking, DNA, Bacterial/genetics, Deltaproteobacteria/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sulfates/metabolism, Sulfites/metabolism, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification, Tunisia, Waste Water/*microbiology
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21203Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26129Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26129)
31087Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172741628776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87908Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405715.1