Strain identifier

BacDive ID: 23891

Type strain: Yes

Species: Brachybacterium huguangmaarense

Strain Designation: M1

Strain history: DSM 26370 <-- Y. Liu; Guangdong Ocean Univ., China; M1.

NCBI tax ID(s): 1652028 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 20477

BacDive-ID: 23891

DSM-Number: 26370

keywords: 16S sequence, Bacteria, mesophilic

description: Brachybacterium huguangmaarense M1 is a mesophilic bacterium that was isolated from lake sediment.

NCBI tax id

  • NCBI tax id: 1652028
  • Matching level: species

strain history

@refhistory
20477<- Y. Liu, Guangdong Ocean Univ., College of Food Science and Technol., China; M1 <- W. Shi
67770DSM 26370 <-- Y. Liu; Guangdong Ocean Univ., China; M1.

doi: 10.13145/bacdive23891.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Dermabacteraceae
  • genus: Brachybacterium
  • species: Brachybacterium huguangmaarense
  • full scientific name: Brachybacterium huguangmaarense Liu et al. 2014

@ref: 20477

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Dermabacteraceae

genus: Brachybacterium

species: Brachybacterium huguangmaarense

full scientific name: Brachybacterium huguangmaarense Liu et al. 2014

strain designation: M1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 20477
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20477positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-7, MK-6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
20477lake sedimentGuangdong Province, Zhanjiang, Huguangyan Maar Lake (110° 17' E 21° 9' N)ChinaCHNAsia21.15110.283
67770Sediment from Huguangyan Maar LakeZhanjiang, Guangdong ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 20477
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20477
  • description: Brachybacterium huguangmaarense strain M1 16S ribosomal RNA gene, partial sequence
  • accession: JX398975
  • length: 1483
  • database: ena
  • NCBI tax ID: 1652028

GC content

@refGC-contentmethod
2047771.0high performance liquid chromatography (HPLC)
6777071high performance liquid chromatography (HPLC)

External links

@ref: 20477

culture collection no.: DSM 26370, CCTCC AB 2012866, JCM 30544

straininfo link

  • @ref: 87901
  • straininfo: 406511

literature

  • topic: Phylogeny
  • Pubmed-ID: 24532648
  • title: Brachybacterium huguangmaarense sp. nov., isolated from Lake sediment.
  • authors: Liu Y, Xie QY, Shi W, Li L, An JY, Zhao YM, Hong K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.052464-0
  • year: 2014
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Lakes/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20477Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26370Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26370)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
87901Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406511.1