Strain identifier
BacDive ID: 23891
Type strain:
Species: Brachybacterium huguangmaarense
Strain Designation: M1
Strain history: DSM 26370 <-- Y. Liu; Guangdong Ocean Univ., China; M1.
NCBI tax ID(s): 1652028 (species)
General
@ref: 20477
BacDive-ID: 23891
DSM-Number: 26370
keywords: 16S sequence, Bacteria, mesophilic
description: Brachybacterium huguangmaarense M1 is a mesophilic bacterium that was isolated from lake sediment.
NCBI tax id
- NCBI tax id: 1652028
- Matching level: species
strain history
@ref | history |
---|---|
20477 | <- Y. Liu, Guangdong Ocean Univ., College of Food Science and Technol., China; M1 <- W. Shi |
67770 | DSM 26370 <-- Y. Liu; Guangdong Ocean Univ., China; M1. |
doi: 10.13145/bacdive23891.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Dermabacteraceae
- genus: Brachybacterium
- species: Brachybacterium huguangmaarense
- full scientific name: Brachybacterium huguangmaarense Liu et al. 2014
@ref: 20477
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dermabacteraceae
genus: Brachybacterium
species: Brachybacterium huguangmaarense
full scientific name: Brachybacterium huguangmaarense Liu et al. 2014
strain designation: M1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 20477
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20477 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7, MK-6
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
20477 | lake sediment | Guangdong Province, Zhanjiang, Huguangyan Maar Lake (110° 17' E 21° 9' N) | China | CHN | Asia | 21.15 | 110.283 |
67770 | Sediment from Huguangyan Maar Lake | Zhanjiang, Guangdong Province | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 20477
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20477
- description: Brachybacterium huguangmaarense strain M1 16S ribosomal RNA gene, partial sequence
- accession: JX398975
- length: 1483
- database: ena
- NCBI tax ID: 1652028
GC content
@ref | GC-content | method |
---|---|---|
20477 | 71.0 | high performance liquid chromatography (HPLC) |
67770 | 71 | high performance liquid chromatography (HPLC) |
External links
@ref: 20477
culture collection no.: DSM 26370, CCTCC AB 2012866, JCM 30544
straininfo link
- @ref: 87901
- straininfo: 406511
literature
- topic: Phylogeny
- Pubmed-ID: 24532648
- title: Brachybacterium huguangmaarense sp. nov., isolated from Lake sediment.
- authors: Liu Y, Xie QY, Shi W, Li L, An JY, Zhao YM, Hong K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.052464-0
- year: 2014
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Lakes/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20477 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26370 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26370) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
87901 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406511.1 |