Strain identifier
BacDive ID: 23875
Type strain: 
Species: Corynebacterium uterequi
Strain Designation: VM 2298
Strain history: CCUG 61235 <-- K. Ortman; Eurofins Food & Agro Sweden, Sweden; VM 2298.
NCBI tax ID(s): 1072256 (species)
version 8.1 (current version)
General
@ref: 20515
BacDive-ID: 23875
DSM-Number: 45634
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, animal pathogen
description: Corynebacterium uterequi VM 2298 is a microaerophile, mesophilic animal pathogen that was isolated from horse, uterus, maiden, liquid accumulation.
NCBI tax id
- NCBI tax id: 1072256
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20515 | <- CCUG; CCUG 61235 <- K. Ortman, Eurofins/Agro, Skara, Sweden |
| 67770 | CCUG 61235 <-- K. Ortman; Eurofins Food & Agro Sweden, Sweden; VM 2298. |
doi: 10.13145/bacdive23875.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium uterequi
- full scientific name: Corynebacterium uterequi Hoyles et al. 2013
@ref: 20515
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium uterequi
full scientific name: Corynebacterium uterequi Hoyles et al. 2013 emend. Nouioui et al. 2018
strain designation: VM 2298
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 96.215 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 20515
- name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535a
- composition: Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20515 | positive | growth | 37 | mesophilic |
| 62585 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62585
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.994 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 20515 | horse, uterus, maiden, liquid accumulation | Skara | Sweden | SWE | Europe | |
| 62585 | Horse,uterus,maiden mare,liquid accumulation | Skara | Sweden | SWE | Europe | 2011-05-01 |
| 67770 | Equine uterus | Skara | Sweden | SWE | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Equidae (Horse) |
| #Host Body-Site | #Urogenital tract | |
| #Host Body Product | #Fluids |
taxonmaps
- @ref: 69479
- File name: preview.99_3568.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1858;97_2230;98_2736;99_3568&stattab=map
- Last taxonomy: Corynebacterium uterequi subclade
- 16S sequence: HE577802
- Sequence Identity:
- Total samples: 4225
- soil counts: 272
- aquatic counts: 232
- animal counts: 3693
- plant counts: 28
Safety information
risk assessment
- @ref: 20515
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20515
- description: Corynebacterium uterequi partial 16S rRNA gene, type strain CCUG 61235T
- accession: HE577802
- length: 1501
- database: ena
- NCBI tax ID: 1072256
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Corynebacterium uterequi DSM 45634 | GCA_001021065 | complete | ncbi | 1072256 |
| 66792 | Corynebacterium uterequi strain DSM 45634 | 1072256.5 | complete | patric | 1072256 |
| 66792 | Corynebacterium uterequi DSM 45634 Genome Sequencing | 2615840660 | complete | img | 1072256 |
GC content
- @ref: 67770
- GC-content: 65.5
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 94.266 | no |
| flagellated | no | 98.087 | no |
| gram-positive | yes | 90.828 | no |
| anaerobic | no | 99.318 | no |
| aerobic | no | 79.626 | yes |
| halophile | yes | 58.702 | no |
| spore-forming | no | 94.864 | no |
| thermophile | no | 92.886 | yes |
| glucose-util | yes | 87.876 | no |
| glucose-ferment | yes | 70.329 | no |
External links
@ref: 20515
culture collection no.: DSM 45634, CCUG 61235, JCM 32214
straininfo link
- @ref: 87887
- straininfo: 404654
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23618836 | Corynebacterium uterequi sp. nov., a non-lipophilic bacterium isolated from urogenital samples from horses. | Hoyles L, Ortman K, Cardew S, Foster G, Rogerson F, Falsen E | Vet Microbiol | 10.1016/j.vetmic.2013.03.025 | 2013 | Animals, Corynebacterium/*classification/genetics/isolation & purification/*physiology, Corynebacterium Infections/microbiology/*veterinary, DNA, Bacterial/chemistry/genetics, Female, Genes, Bacterial/genetics, Horse Diseases/*microbiology, Horses, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Scotland, Sequence Homology, Nucleic Acid, Species Specificity, Sweden, Urogenital System/*microbiology | Genetics |
| Genetics | 26227590 | Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare. | Ruckert C, Kriete M, Jaenicke S, Winkler A, Tauch A | Genome Announc | 10.1128/genomeA.00783-15 | 2015 | Phylogeny |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20515 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45634 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45634) | |||
| 62585 | Curators of the CCUG | https://www.ccug.se/strain?id=61235 | Culture Collection University of Gothenburg (CCUG) (CCUG 61235) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 87887 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404654.1 |