Strain identifier
BacDive ID: 23874
Type strain: 
Species: Melaminivora alkalimesophila
Strain history: <- L. Jiangwei, Chinese Academy of Science, Inst. of Urban Environment and Health, China; CY1 <- H. Wang, Chinese Academy of Sciences, Urban Environment
NCBI tax ID(s): 1165852 (species)
version 8.1 (current version)
General
@ref: 21340
BacDive-ID: 23874
DSM-Number: 26006
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Melaminivora alkalimesophila DSM 26006 is a mesophilic, motile bacterium that was isolated from wastewater sludge of a melamine-producing factory.
NCBI tax id
- NCBI tax id: 1165852
- Matching level: species
strain history
- @ref: 21340
- history: <- L. Jiangwei, Chinese Academy of Science, Inst. of Urban Environment and Health, China; CY1 <- H. Wang, Chinese Academy of Sciences, Urban Environment
doi: 10.13145/bacdive23874.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Melaminivora
- species: Melaminivora alkalimesophila
- full scientific name: Melaminivora alkalimesophila Wang et al. 2014
@ref: 21340
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Melaminivora
species: Melaminivora alkalimesophila
full scientific name: Melaminivora alkalimesophila Wang et al. 2014
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.932 | |
| 69480 | 100 | negative |
Culture and growth conditions
culture medium
- @ref: 21340
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 21340
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.983 |
Isolation, sampling and environmental information
isolation
- @ref: 21340
- sample type: wastewater sludge of a melamine-producing factory
- geographic location: Fujian Province, Sanming city (117° 16.097' E 26° 37.193' N)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 26.6199
- longitude: 117.268
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Plant (Factory) |
| #Engineered | #Waste | #Sewage sludge |
| #Engineered | #Waste | #Wastewater |
taxonmaps
- @ref: 69479
- File name: preview.99_7994.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_3699;97_4543;98_5830;99_7994&stattab=map
- Last taxonomy: Melaminivora alkalimesophila
- 16S sequence: JQ676982
- Sequence Identity:
- Total samples: 1327
- soil counts: 72
- aquatic counts: 257
- animal counts: 363
- plant counts: 635
Safety information
risk assessment
- @ref: 21340
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21340
- description: Melaminivora alkalimesophila strain CY1 16S ribosomal RNA gene, partial sequence
- accession: JQ676982
- length: 1436
- database: ena
- NCBI tax ID: 1165852
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Melaminivora alkalimesophila DSM 26006 | GCA_003182375 | scaffold | ncbi | 1165852 |
| 66792 | Melaminivora alkalimesophila strain DSM 26006 | 1165852.3 | wgs | patric | 1165852 |
| 66792 | Melaminivora alkalimesophila DSM 26006 | 2770939489 | draft | img | 1165852 |
GC content
- @ref: 21340
- GC-content: 69.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | yes | 58.093 | no |
| gram-positive | no | 98.77 | no |
| anaerobic | no | 98.754 | no |
| halophile | no | 92.313 | no |
| spore-forming | no | 95.34 | no |
| glucose-util | no | 84.691 | no |
| aerobic | yes | 94.674 | no |
| thermophile | no | 90.483 | yes |
| motile | yes | 87.948 | no |
| glucose-ferment | no | 90.059 | no |
External links
@ref: 21340
culture collection no.: DSM 26006, CCTCC AB 2012024, CY 1
straininfo link
- @ref: 87886
- straininfo: 401418
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24591424 | Melaminivora alkalimesophila gen. nov., sp. nov., a melamine-degrading betaproteobacterium isolated from a melamine-producing factory. | Wang H, Li J, Hu A, Qin D, Xu H, Yu CP | Int J Syst Evol Microbiol | 10.1099/ijs.0.055103-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phosphatidylethanolamines, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, *Triazines, Ubiquinone/chemistry | Genetics |
| Phylogeny | 28895512 | Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium. | Vaz-Moreira I, Narciso-da-Rocha C, Lopes AR, Carvalho G, Lobo-da-Cunha A, Whitman WB, Snauwaert C, Vandamme P, Manaia CM, Nunes OC | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002184 | 2017 | Bacterial Typing Techniques, Base Composition, Comamonadaceae/classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Oryza, Phospholipids/chemistry, *Phylogeny, Portugal, Propanil/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 29111968 | Melaminivora jejuensis sp. nov., isolated from Swinery waste. | Kim JY, Park SH, Lee DH, Song G, Kim YJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002294 | 2017 | Animals, Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Manure/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Swine, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 31046896 | Pulveribacter suum gen. nov., sp. nov., isolated from a pig farm dust collector. | Heo J, Cho HY, Heo I, Hong SB, Kim JS, Kwon SW, Kim SJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003082 | 2019 | Animals, Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/isolation & purification, DNA, Bacterial/genetics, *Dust, *Farms, Fatty Acids/chemistry, Genes, Bacterial, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Swine, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21340 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26006 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26006) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 87886 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401418.1 |