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Strain identifier

BacDive ID: 23874

Type strain: Yes

Species: Melaminivora alkalimesophila

Strain history: <- L. Jiangwei, Chinese Academy of Science, Inst. of Urban Environment and Health, China; CY1 <- H. Wang, Chinese Academy of Sciences, Urban Environment

NCBI tax ID(s): 1165852 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21340

BacDive-ID: 23874

DSM-Number: 26006

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Melaminivora alkalimesophila DSM 26006 is a mesophilic bacterium that was isolated from wastewater sludge of a melamine-producing factory.

NCBI tax id

  • NCBI tax id: 1165852
  • Matching level: species

strain history: <- L. Jiangwei, Chinese Academy of Science, Inst. of Urban Environment and Health, China; CY1 <- H. Wang, Chinese Academy of Sciences, Urban Environment

doi: 10.13145/bacdive23874.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Melaminivora
  • species: Melaminivora alkalimesophila
  • full scientific name: Melaminivora alkalimesophila Wang et al. 2014

@ref: 21340

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Melaminivora

species: Melaminivora alkalimesophila

full scientific name: Melaminivora alkalimesophila Wang et al. 2014

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes70.227
6948099.63negative

Culture and growth conditions

culture medium

  • @ref: 21340
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 21340
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.292

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.085

Isolation, sampling and environmental information

isolation

  • @ref: 21340
  • sample type: wastewater sludge of a melamine-producing factory
  • geographic location: Fujian Province, Sanming city (117° 16.097' E 26° 37.193' N)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 26.6199
  • longitude: 117.268

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Plant (Factory)
#Engineered#Waste#Sewage sludge
#Engineered#Waste#Wastewater

taxonmaps

  • @ref: 69479
  • File name: preview.99_7994.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_3699;97_4543;98_5830;99_7994&stattab=map
  • Last taxonomy: Melaminivora alkalimesophila
  • 16S sequence: JQ676982
  • Sequence Identity:
  • Total samples: 1327
  • soil counts: 72
  • aquatic counts: 257
  • animal counts: 363
  • plant counts: 635

Safety information

risk assessment

  • @ref: 21340
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21340
  • description: Melaminivora alkalimesophila strain CY1 16S ribosomal RNA gene, partial sequence
  • accession: JQ676982
  • length: 1436
  • database: ena
  • NCBI tax ID: 1165852

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Melaminivora alkalimesophila DSM 26006GCA_003182375scaffoldncbi1165852
66792Melaminivora alkalimesophila strain DSM 260061165852.3wgspatric1165852
66792Melaminivora alkalimesophila DSM 260062770939489draftimg1165852
66792Enterobacter hormaechei G4719GCA_020676035contigpatric158836

GC content

  • @ref: 21340
  • GC-content: 69.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21340

culture collection no.: DSM 26006, CCTCC AB 2012024, CY 1

straininfo link

@refpassport
20218http://www.straininfo.net/strains/896772
20218http://www.straininfo.net/strains/896771

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24591424Melaminivora alkalimesophila gen. nov., sp. nov., a melamine-degrading betaproteobacterium isolated from a melamine-producing factory.Wang H, Li J, Hu A, Qin D, Xu H, Yu CPInt J Syst Evol Microbiol10.1099/ijs.0.055103-02014Bacterial Typing Techniques, Base Composition, China, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phosphatidylethanolamines, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, *Triazines, Ubiquinone/chemistryGenetics
Phylogeny28895512Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium.Vaz-Moreira I, Narciso-da-Rocha C, Lopes AR, Carvalho G, Lobo-da-Cunha A, Whitman WB, Snauwaert C, Vandamme P, Manaia CM, Nunes OCInt J Syst Evol Microbiol10.1099/ijsem.0.0021842017Bacterial Typing Techniques, Base Composition, Comamonadaceae/classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Oryza, Phospholipids/chemistry, *Phylogeny, Portugal, Propanil/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny29111968Melaminivora jejuensis sp. nov., isolated from Swinery waste.Kim JY, Park SH, Lee DH, Song G, Kim YJInt J Syst Evol Microbiol10.1099/ijsem.0.0022942017Animals, Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Manure/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Swine, Ubiquinone/chemistryTranscriptome
Phylogeny31046896Pulveribacter suum gen. nov., sp. nov., isolated from a pig farm dust collector.Heo J, Cho HY, Heo I, Hong SB, Kim JS, Kwon SW, Kim SJInt J Syst Evol Microbiol10.1099/ijsem.0.0030822019Animals, Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/isolation & purification, DNA, Bacterial/genetics, *Dust, *Farms, Fatty Acids/chemistry, Genes, Bacterial, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Swine, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21340Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26006Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26006)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes