Archive BacDiveID:10.13145/bacdive23873.20230509.8.1

Strain identifier

BacDive ID: 23873

Type strain:

Species: Caenimonas terrae

Strain Designation: SGM1-15

Strain history: <- KACC <- S.-J. Kim et al., KACC

NCBI tax ID(s): 696074 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 21185

BacDive-ID: 23873

DSM-Number: 27942

keywords: 16S sequence, Bacteria, mesophilic

description: Caenimonas terrae SGM1-15 is a mesophilic bacterium that was isolated from green house soil.

NCBI tax id

NCBI tax id: 696074
Matching level: species

strain history

@ref: 21185
history: <- KACC <- S.-J. Kim et al., KACC

doi: 10.13145/bacdive23873.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Caenimonas
species: Caenimonas terrae
full scientific name: Caenimonas terrae Kim et al. 2013

@ref: 21185

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Caenimonas

species: Caenimonas terrae

full scientific name: Caenimonas terrae Kim et al. 2013

strain designation: SGM1-15

type strain: yes

Morphology

colony morphology

@ref: 21185
incubation period: 3-7 days

Culture and growth conditions

culture medium

@ref: 21185
name: R2A MEDIUM (DSMZ Medium 830)
growth: yes
link: https://mediadive.dsmz.de/medium/830
composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@ref: 21185
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 21185
sample type: green house soil
geographic location: Suwon
country: Republic of Korea
origin.country: KOR
continent: Asia
latitude: 37.2747
longitude: 126.992

isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Greenhouse
#Environmental	#Terrestrial	#Soil

Safety information

risk assessment

@ref: 21185
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 21185
description: Caenimonas terrae strain SGM1-15 16S ribosomal RNA gene, partial sequence
accession: GU181268
length: 1433
database: ena
NCBI tax ID: 696074

External links

@ref: 21185

culture collection no.: DSM 27942, KACC 13365, NBRC 106341

straininfo link

@ref: 87885
straininfo: 400020

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	23124758	Caenimonas terrae sp. nov., isolated from a soil sample in Korea, and emended description of the genus Caenimonas Ryu et al. 2008.	Kim SJ, Weon HY, Kim YS, Moon JY, Seok SJ, Hong SB, Kwon SW	J Microbiol	10.1007/s12275-012-1587-6	2012	Base Composition, Comamonadaceae/classification/genetics/isolation & purification/metabolism, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology	Metabolism
Phylogeny	33174135	Caenimonas soli sp. nov., isolated from soil.	Dahal RH, Lee H, Chaudhary DK, Kim DY, Son J, Kim J, Ka JO, Kim DU	Arch Microbiol	10.1007/s00203-020-02110-8	2020	Base Composition, Comamonadaceae/classification/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology, Species Specificity
Phylogeny	35354765	Caenimonas aquaedulcis sp. nov., Isolated from Freshwater of Daechung Reservoir during Microcystis Bloom.	Le VV, Ko SR, Lee SA, Kang M, Oh HM, Ahn CY	J Microbiol Biotechnol	10.4014/jmb.2201.01023	2022	Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Fresh Water, *Microcystis/genetics, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA	Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
21185	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-27942	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27942)
87885	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID400020.1